Browse Element(s) Details


OsAffx.17264.1.S1_s_at

Description tigr:9636.m03117
TID=OsAffx.17264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical Protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3121011/11hAT family dimerisation domain containing protein
LOC_Os04g2552011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31180OsAffx.17263.1.S1_at11/118+19144478..19144918hypothetical protein
LOC_Os08g31190NANA8+19145842..19148441transposon protein, putative, Mutator sub-class
LOC_Os08g31200Os.47907.1.S1_at1/118+19159979..19162067UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g31210OsAffx.17264.1.S1_s_at11/118+19166286..19168841hAT family dimerisation domain containing protein
LOC_Os08g31219Os.8363.1.S1_at11/118+19171897..1917299250S ribosomal protein L27, putative, expressed
LOC_Os08g31228Os.8363.1.S1_at11/118+19174559..1917812150S ribosomal protein L27, putative, expressed
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17264.1.S1_s_at--295--10752Chr08:19168121..19168145 (25 bp)
TTGCAACCATTCTTGATCCTCGCTA
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--320--6372Chr08:19168135..19168159 (25 bp)
GATCCTCGCTACAAATTGAAGTCTA
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--68--832Chr08:19168172..19168196 (25 bp)
ATGGATTGCTTTATCCTTCTGAAAA
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--237--5152Chr08:19168261..19168285 (25 bp)
GCAACAATGCAATCCTCATCAGTTG
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--369--2252Chr08:19168299..19168323 (25 bp)
AAATTTCCAGGAGTGCAGTTCACAA
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--763--6752Chr08:19168316..19168340 (25 bp)
GTTCACAATCACATGAGTCCTCGTT
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--818--8872Chr08:19168329..19168353 (25 bp)
TGAGTCCTCGTTGAGCTTATTTTCT
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--151--772Chr08:19168421..19168445 (25 bp)
ATGTCTATCTTGATGATCCTCCACA
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--715--2052Chr08:19168462..19168486 (25 bp)
ACTTCTTTTGACATCTTGGCTTGGT
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--225--10132Chr08:19168507..19168531 (25 bp)
TATCCAATTATTTCTCGAATGGCTC
LOC_Os08g31210
OsAffx.17264.1.S1_s_at--1064--5012Chr08:19168616..19168640 (25 bp)
GCAGTCTACTGCCTGAAACACTTGA
LOC_Os08g31210
Target Sequence 
TTGCAACCATTCTTGATCCTCGCTACAAATTGAAGTCTATTGAGTACTTCTATGGATTGCTTTATCCTTCTGAAAAAGAT
GTGAAATTTGAACATATGAGGAGATGCTTTAGTGAATTATTTGATGAGTATTCAAAGCAAGCAACAATGCAATCCTCATC
AGTTGTTGACACTTCAAGAAATTTCCAGGAGTGCAGTTCACAATCACATGAGTCCTCGTTGAGCTTATTTTCTACCATAG
TAGGATTAGAAAAGTATATCCAAGATAGCAACTCAAGCCAGCAAACAACATCAGAGCTCAATGTCTATCTTGATGATCCT
CCACATCCTGGAATCAGTGATACTTCTTTTGACATCTTGGCTTGGTGGAAGTTGTATGGTTCCAAATATCCAATTATTTC
TCGAATGGCTCGTGATATCTTAAGTGTTCCTATGTCGACAGTAGCATCTGAATCATGCTTCAGTTTAGCTAATCAAGCAC
TTGATGAGAAGAGGTGCAGTCTACTGCCTGAAACACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17264.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis