Browse Element(s) Details


Os.54351.1.S1_at

Description gb:AK103556.1
DB_XREF= gi:32988765
TID=Os.54351.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132H06, full insert sequence.
FL= gb:AK103556.1 gb:AK108951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3125011/11C1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31210OsAffx.17264.1.S1_s_at11/118+19166286..19168841hAT family dimerisation domain containing protein
LOC_Os08g31219Os.8363.1.S1_at11/118+19171897..1917299250S ribosomal protein L27, putative, expressed
LOC_Os08g31228Os.8363.1.S1_at11/118+19174559..1917812150S ribosomal protein L27, putative, expressed
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed
LOC_Os08g31260OsAffx.17265.1.S1_at11/118+19202150..19202425hypothetical protein
LOC_Os08g31270OsAffx.17266.1.S1_at11/118+19204523..19205986F-box domain containing protein
LOC_Os08g31280OsAffx.17267.1.S1_at11/118+19207630..19208490C1-like domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54351.1.S1_at--200--4651Chr08:19192780..19192804 (25 bp)
GCGTCTTCGAGCTCACCAAGGCGGC
LOC_Os08g31250
Os.54351.1.S1_at--270--1151Chr08:19192849..19192873 (25 bp)
AGTCGCGCAGGACGTTCTGGTTCTA
LOC_Os08g31250
Os.54351.1.S1_at--15--6191Chr08:19192893..19192917 (25 bp)
GAGGACGTGTTCATCCACGTGGCGT
LOC_Os08g31250
Os.54351.1.S1_at--47--511Chr08:19193076..19193100 (25 bp)
ATCGTGGGTGTCATCGTGAGCGCCA
LOC_Os08g31250
Os.54351.1.S1_at--140--7391Chr08:19193091..19193115 (25 bp)
GTGAGCGCCATAATCGCCGTCATCT
LOC_Os08g31250
Os.54351.1.S1_at--32--3831Chr08:19193155..19193179 (25 bp)
CTGACGGTCTTCTCCGCGGGTAGAA
LOC_Os08g31250
Os.54351.1.S1_at--85--2411Chr08:19193190..19193214 (25 bp)
AAACAGTGTGCTGCTAATTAGCAAC
LOC_Os08g31250
Os.54351.1.S1_at--200--5151Chr08:19193210..19193234 (25 bp)
GCAACAGTCAACGAGTGCGTCACGT
LOC_Os08g31250
Os.54351.1.S1_at--315--4071Chr08:19193221..19193245 (25 bp)
CGAGTGCGTCACGTGTAGAGTGTTC
LOC_Os08g31250
Os.54351.1.S1_at--700--1331Chr08:19193237..19193261 (25 bp)
AGAGTGTTCTTCTCTATGATTTTTT
LOC_Os08g31250
Os.54351.1.S1_at--627--9751Chr08:19193293..19193317 (25 bp)
TAATCTTGTGGTGGGTTTGGAATAT
LOC_Os08g31250
Target Sequence 
GCGTCTTCGAGCTCACCAAGGCGGCGTCGTCGTCGTCGTCGCGGCGCCGCTGCGGCGTCTGCGGGGACAAGTCGCGCAGG
ACGTTCTGGTTCTACCGCGGCCGCTTCGACGGCGAGGACGTGTTCATCCACGTGGCGTGCGTGAAGGAGCTCGCCGTGCG
GAGGTGGGAGGCGAGCTACCGCCGCCGCAGCGGCGCCGGCCAGATCGCGCTCGCCGGCGCGCCGCTCATGGAGGGCGCCC
TGCAGAGCCTGCCAAGGAGGACGCGGCGGAGCGGCGGGTTCGAGCGGTTCAGCAAGATCGTGGGTGTCATCGTGAGCGCC
ATAATCGCCGTCATCTTCGGGAATCCGATGGGGTTGATCGCCGCGGTGGCCGGCCCTGACGGTCTTCTCCGCGGGTAGAA
GACGAGTGGAAAACAGTGTGCTGCTAATTAGCAACAGTCAACGAGTGCGTCACGTGTAGAGTGTTCTTCTCTATGATTTT
TTTTTCTTCGTATAAACCCGAATGTTTTATTTTTAATCTTGTGGTGGGTTTGGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis