Browse Element(s) Details


OsAffx.17266.1.S1_at

Description tigr:9636.m03123
TID=OsAffx.17266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3127011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed
LOC_Os08g31260OsAffx.17265.1.S1_at11/118+19202150..19202425hypothetical protein
LOC_Os08g31270OsAffx.17266.1.S1_at11/118+19204523..19205986F-box domain containing protein
LOC_Os08g31280OsAffx.17267.1.S1_at11/118+19207630..19208490C1-like domain containing protein
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17266.1.S1_at--614--7711Chr08:19205083..19205107 (25 bp)
GGGTGCTTCTACTGGCTGACCCACC
LOC_Os08g31270
OsAffx.17266.1.S1_at--1035--10571Chr08:19204762..19204786 (25 bp)
TTCTACTACTTCCACATGCTGTTCG
LOC_Os08g31270
OsAffx.17266.1.S1_at--192--4111Chr08:19204682..19204706 (25 bp)
CGACAGCGGCTACAAGCTATGGCGC
LOC_Os08g31270
OsAffx.17266.1.S1_at--449--10091Chr08:19204665..19204689 (25 bp)
TATGGCGCTACGACTACCTCGAGAG
LOC_Os08g31270
OsAffx.17266.1.S1_at--120--5711Chr08:19204654..19204678 (25 bp)
GACTACCTCGAGAGCGGCGACAATC
LOC_Os08g31270
OsAffx.17266.1.S1_at--773--5011Chr08:19204629..19204653 (25 bp)
GCAGGGTGGAGCTCTGGAACCTCAA
LOC_Os08g31270
OsAffx.17266.1.S1_at--933--8491Chr08:19204615..19204639 (25 bp)
TGGAACCTCAACAACCCTAAGGACG
LOC_Os08g31270
OsAffx.17266.1.S1_at--607--9771Chr08:19204598..19204622 (25 bp)
TAAGGACGACAATCTCCGCGATCTC
LOC_Os08g31270
OsAffx.17266.1.S1_at--374--471Chr08:19204587..19204611 (25 bp)
ATCTCCGCGATCTCTACGAACGCAA
LOC_Os08g31270
OsAffx.17266.1.S1_at--720--1831Chr08:19204572..19204596 (25 bp)
ACGAACGCAACCAGGTCTCCTACGT
LOC_Os08g31270
OsAffx.17266.1.S1_at--229--3731Chr08:19204553..19204577 (25 bp)
CTACGTCTTCGAAGAGCTCTACGAC
LOC_Os08g31270
Target Sequence 
GGGTGCTTCTACTGGCTGACCCACCGCCGCAACCGCGGCCGCATCCTCCGCTACGACGTCGCCGGCGGCCGAGTCACCGT
GGTCCGCGAGCCCGCGAGGGCGGAGGGGTCCATCGGGCGGGCGGAGCGGTCGCTGGGCTCGACCGGCGGGCGCCTCCGGA
TGTGCGCGTTCGACGTCCGCGACGACAGCGACGAGAGCGGCAGCCCGTATCCGCACGACGGCGGCGTGGGCGTGCACGGC
GTGTGGGTGATGACGACGGACGACGGCGTCGCCGCTCCGGCGTGGCGGCGCGTGCACGAGGCGACGGTGGACGACGTCGG
CTTCTACTACTTCCACATGCTGTTCGAGCGCGAGAGGCCGGTGGACTTCGCCGGCGCGTGCGGCGACTTCGTCGTGCTGG
ACGACAGCGGCTACAAGCTATGGCGCTACGACTACCTCGAGAGCGGCGACAATCGCAGGGTGGAGCTCTGGAACCTCAAC
AACCCTAAGGACGACAATCTCCGCGATCTCTACGAACGCAACCAGGTCTCCTACGTCTTCGAAGAGCTCTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis