Browse Element(s) Details


OsAffx.17267.1.S1_at

Description tigr:9636.m03124
TID=OsAffx.17267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DC1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3128011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed
LOC_Os08g31260OsAffx.17265.1.S1_at11/118+19202150..19202425hypothetical protein
LOC_Os08g31270OsAffx.17266.1.S1_at11/118+19204523..19205986F-box domain containing protein
LOC_Os08g31280OsAffx.17267.1.S1_at11/118+19207630..19208490C1-like domain containing protein
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein
LOC_Os08g31300OsAffx.29451.1.S1_at11/118+19231800..19232104hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17267.1.S1_at--265--5771Chr08:19208148..19208172 (25 bp)
GACGTCAGGGTCTGCGACGCGTGCG
LOC_Os08g31280
OsAffx.17267.1.S1_at--738--9291Chr08:19207946..19207970 (25 bp)
TCCGCCGCAACTACTGGACGTACAG
LOC_Os08g31280
OsAffx.17267.1.S1_at--733--4111Chr08:19207941..19207965 (25 bp)
CGCAACTACTGGACGTACAGCTCCG
LOC_Os08g31280
OsAffx.17267.1.S1_at--418--2791Chr08:19207872..19207896 (25 bp)
AAGAGGATGGCCTACGAGAGCTCTA
LOC_Os08g31280
OsAffx.17267.1.S1_at--705--871Chr08:19207866..19207890 (25 bp)
ATGGCCTACGAGAGCTCTAGAGCCG
LOC_Os08g31280
OsAffx.17267.1.S1_at--593--1871Chr08:19207859..19207883 (25 bp)
ACGAGAGCTCTAGAGCCGGCAGCAG
LOC_Os08g31280
OsAffx.17267.1.S1_at--438--591Chr08:19207794..19207818 (25 bp)
ATGCCGGTGATCAGGGCTCCGGTTC
LOC_Os08g31280
OsAffx.17267.1.S1_at--1014--3931Chr08:19207766..19207790 (25 bp)
CGGCGGTGGCTCTGCGGAAGAAGAA
LOC_Os08g31280
OsAffx.17267.1.S1_at--691--8431Chr08:19207736..19207760 (25 bp)
GGCCTAGGAGCAAGCTCAAGAAGCT
LOC_Os08g31280
OsAffx.17267.1.S1_at--769--9251Chr08:19207712..19207736 (25 bp)
TCCTCAAGATCGTCGTGTTCGTCCT
LOC_Os08g31280
OsAffx.17267.1.S1_at--1099--531Chr08:19207680..19207704 (25 bp)
ATCGCCGGCGTGTTGTTCGGTGACC
LOC_Os08g31280
Target Sequence 
GACGTCAGGGTCTGCGACGCGTGCGGCGACGACGTGCGCGGCTTCGTCTACCACTGCTTCGACCGCGACCTCGACCTCCA
CCCCTGCTGCGCGCACCTGCCGGGCCGCGTCGCTCTCGGCGGGGCCGCGTTCGAGCTCTCCTCCGGCGGCACGGCTCCCC
GGCGGTGCCTCCTCTGCACGGAGGAGGGGAGCCGCCCCCACCTCCGCCGCAACTACTGGACGTACAGCTCCGACGACCTC
GACGGCGAGGCCGTGCACCTGCACGTGGCGTGCGTGAAGAGGATGGCCTACGAGAGCTCTAGAGCCGGCAGCAGCAGCAG
CCACCGCACCGACGGCGGCGGCGGCGGCCGGAACATGCCGGTGATCAGGGCTCCGGTTCAGGCGGCGGTGGCTCTGCGGA
AGAAGAACGGGAGGCCTAGGAGCAAGCTCAAGAAGCTCCTCAAGATCGTCGTGTTCGTCCTCCGCGTCATCGCCGGCGTG
TTGTTCGGTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis