Browse Element(s) Details


OsAffx.17265.1.S1_at

Description tigr:9636.m03122
TID=OsAffx.17265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3126011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31228Os.8363.1.S1_at11/118+19174559..1917812150S ribosomal protein L27, putative, expressed
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed
LOC_Os08g31260OsAffx.17265.1.S1_at11/118+19202150..19202425hypothetical protein
LOC_Os08g31270OsAffx.17266.1.S1_at11/118+19204523..19205986F-box domain containing protein
LOC_Os08g31280OsAffx.17267.1.S1_at11/118+19207630..19208490C1-like domain containing protein
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17265.1.S1_at--393--4691Chr08:19202319..19202343 (25 bp)
GCGGCAGGAGCATCATCAGCGTCTC
LOC_Os08g31260
OsAffx.17265.1.S1_at--852--971Chr08:19202314..19202338 (25 bp)
AGGAGCATCATCAGCGTCTCCATCC
LOC_Os08g31260
OsAffx.17265.1.S1_at--266--7171Chr08:19202299..19202323 (25 bp)
GTCTCCATCCTGGAGAAGACGATGA
LOC_Os08g31260
OsAffx.17265.1.S1_at--263--5391Chr08:19202273..19202297 (25 bp)
GAAGCGGAAGCGGTCCAGGACTGGC
LOC_Os08g31260
OsAffx.17265.1.S1_at--61--9231Chr08:19202260..19202284 (25 bp)
TCCAGGACTGGCAAGGCGGTGAAAT
LOC_Os08g31260
OsAffx.17265.1.S1_at--1133--5171Chr08:19202250..19202274 (25 bp)
GCAAGGCGGTGAAATGCTTCCTCAA
LOC_Os08g31260
OsAffx.17265.1.S1_at--282--911Chr08:19202247..19202271 (25 bp)
AGGCGGTGAAATGCTTCCTCAACTT
LOC_Os08g31260
OsAffx.17265.1.S1_at--434--3971Chr08:19202244..19202268 (25 bp)
CGGTGAAATGCTTCCTCAACTTCGC
LOC_Os08g31260
OsAffx.17265.1.S1_at--313--7111Chr08:19202206..19202230 (25 bp)
GTCAGCGTGCTGTTCGGGGACCCAA
LOC_Os08g31260
OsAffx.17265.1.S1_at--922--5792Chr07:17653471..17653490 (20 bp)
GACCCAACGGGATTGGCGGTGCCTC
NONE
OsAffx.17265.1.S1_at--998--7651Chr08:19202180..19202204 (25 bp)
GGGATTGGCGGTGCCTCTCGTCGGA
LOC_Os08g31260
Target Sequence 
GCGGCAGGAGCATCATCAGCGTCTCCATCCTGGAGAAGACGATGAAGAAGCGGAAGCGGTCCAGGACTGGCAAGGCGGTG
AAATGCTTCCTCAACTTCGCCATCTCCGTCATCGTCAGCGTGCTGTTCGGGGACCCAACGGGATTGGCGGTGCCTCTCGT
CGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis