Browse Element(s) Details


OsAffx.17315.1.S1_at

Description tigr:9636.m03370
TID=OsAffx.17315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to arginine decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3362011/11Arginine decarboxylase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33590Os.56209.1.S1_at11/118+20841435..20844412Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g33600NANA8+20849854..20851458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g33610OsAffx.8551.1.S1_at1/118+20851733..20852789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g33620OsAffx.17315.1.S1_at11/118+20864435..20864954Arginine decarboxylase, putative
LOC_Os08g33630Os.48111.1.S1_at11/118+20867234..20871104Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0006970biological_processresponse to osmotic stress
GO:0006979biological_processresponse to oxidative stress
GO:0009446biological_processputrescine biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0048316biological_processseed development
GO:0008792molecular_functionarginine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17315.1.S1_at--179--531Chr08:20864465..20864489 (25 bp)
ATCCCAATCCAGTGCCTTGGTGAGC
LOC_Os08g33620
OsAffx.17315.1.S1_at--853--3031Chr08:20864470..20864494 (25 bp)
AATCCAGTGCCTTGGTGAGCGCCCT
LOC_Os08g33620
OsAffx.17315.1.S1_at--1031--1131Chr08:20864475..20864499 (25 bp)
AGTGCCTTGGTGAGCGCCCTGCAAT
LOC_Os08g33620
OsAffx.17315.1.S1_at--299--8611Chr08:20864482..20864506 (25 bp)
TGGTGAGCGCCCTGCAATCGACGGC
LOC_Os08g33620
OsAffx.17315.1.S1_at--707--9371Chr08:20864544..20864568 (25 bp)
TCGACCACTTCATCAGCGGGAGGCA
LOC_Os08g33620
OsAffx.17315.1.S1_at--269--9671Chr08:20864556..20864580 (25 bp)
TCAGCGGGAGGCACAGCCTGCCGCT
LOC_Os08g33620
OsAffx.17315.1.S1_at--423--7571Chr08:20864648..20864672 (25 bp)
GGGCTCCACAACCTGTTCGGCGGGC
LOC_Os08g33620
OsAffx.17315.1.S1_at--1129--9431Chr08:20864664..20864746 (25 bp)
TCGGCGGGCCGAGCGTGCACGAGCA
LOC_Os08g33620
OsAffx.17315.1.S1_at--356--3991Chr08:20864747..20864771 (25 bp)
CGAGGTGTTCAAGCAGAGAACCGAC
LOC_Os08g33620
OsAffx.17315.1.S1_at--31--10511Chr08:20864754..20864778 (25 bp)
TTCAAGCAGAGAACCGACGGCGCCA
LOC_Os08g33620
OsAffx.17315.1.S1_at--774--1991Chr08:20864789..20864813 (25 bp)
ACTCGCCAAAGCGTTCGGCGCAATG
LOC_Os08g33620
Target Sequence 
ATCCCAATCCAGTGCCTTGGTGAGCGCCCTGCAATCGACGGCGTCCTCTCCGACCTCACCTCCGACAGCGACGGCAAGGT
CGACCACTTCATCAGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGTCCACGGCACCCGCGGCTACTACCTCGGCG
GCACCTACCAGGAGGCCCTCGGCGGGCTCCACAACCTGTTCGGCGGGCCGAGCGTGCACGAGCACGAGGTGTTCAAGCAG
AGAACCGACGGCGCCACCGCCGCCGCACTCGCCAAAGCGTTCGGCGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis