Browse Element(s) Details


OsAffx.17383.1.S1_at

Description tigr:9636.m03793
TID=OsAffx.17383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cellulase (glycosyl hydrolase family 5), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3775011/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g37750OsAffx.17383.1.S1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37750Os.19280.1.A1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17383.1.S1_at--301--3431Chr08:23783038..23783062 (25 bp)
CAGATTGTACGAAGTTATTCGGACA
LOC_Os08g37750
OsAffx.17383.1.S1_at--489--9431Chr08:23783056..23783080 (25 bp)
TCGGACAAAGCTTACGTTATATTCT
LOC_Os08g37750
OsAffx.17383.1.S1_at--930--4891Chr08:23783065..23783089 (25 bp)
GCTTACGTTATATTCTGCCAGAGGA
LOC_Os08g37750
OsAffx.17383.1.S1_at--823--10211Chr08:23783075..23783099 (25 bp)
TATTCTGCCAGAGGATTGGGAATGC
LOC_Os08g37750
OsAffx.17383.1.S1_at--786--5811Chr08:23783101..23783125 (25 bp)
GACCCAATGGAGCTTTATCAGGCTG
LOC_Os08g37750
OsAffx.17383.1.S1_at--617--10171Chr08:23783116..23783140 (25 bp)
TATCAGGCTGACCTGGGTCCAACTA
LOC_Os08g37750
OsAffx.17383.1.S1_at--1031--7691Chr08:23783130..23783154 (25 bp)
GGGTCCAACTAACACTGTTGTAGAC
LOC_Os08g37750
OsAffx.17383.1.S1_at--802--3731Chr08:23783138..23783162 (25 bp)
CTAACACTGTTGTAGACTTGCATTA
LOC_Os08g37750
OsAffx.17383.1.S1_at--52--731Chr08:23784014..23784038 (25 bp)
ATGATACTTGAAACTCACCACCAGA
LOC_Os08g37750
OsAffx.17383.1.S1_at--90--5551Chr08:23784023..23784047 (25 bp)
GAAACTCACCACCAGAAGATAGAAT
LOC_Os08g37750
OsAffx.17383.1.S1_at--1037--2031Chr08:23784053..23784077 (25 bp)
ACTTTGAGGCATTTACTCATTCACA
LOC_Os08g37750
Target Sequence 
CAGATTGTACGAAGTTATTCGGACAAAGCTTACGTTATATTCTGCCAGAGGATTGGGAATGCAGACCCAATGGAGCTTTA
TCAGGCTGACCTGGGTCCAACTAACACTGTTGTAGACTTGCATTACTACAATCTGTTTGATCCGTTTTTTGAGAAACTTA
ATGCAACAGAGAACATACAGTTCATATACAATAACAGAATGCCTCAAGTGCAGGCCTTGGATAAAGCGAATGGACCTCTT
GTTTTTATTGGAGAATGGGTAAATGAATGGAATGTGACAGACGCTTCACAAACCGAATACCAGTTGTTTGGAAAAGCCCA
ATTAGAGGTCTACGGGGAAGCCTCCTTTGGCTGGTCTTATTGGACAGTCAGGTGCAACAGTGTGCACTGGGATTATGAAT
GGAACAAAAGGAATAGGTACCTCATTGGTGGTTCACCGTTGGAAAGCCCAAAGTACATGCTTCTTGTGGCAGGATGCCTA
CTCTATCTTTTATTTATATTGACATGATACTTGAAACTCACCACCAGAAGATAGAATTTCTCACTTTGAGGCATTTACTC
ATTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis