Browse Element(s) Details


OsAffx.17418.1.S1_at

Description tigr:9636.m03988
TID=OsAffx.17418.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3947010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os08g39460Os.52825.1.S1_at11/118+24832923..24834505Protein kinase domain containing protein, expressed
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein
LOC_Os08g39490Os.49559.1.S1_at10/118+24854032..24858377expressed protein
LOC_Os08g39500Os.7955.1.A1_at6/118+24860221..2486164460S ribosomal protein L31, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17418.1.S1_at--416--4751Chr08:24840614..24840638 (25 bp)
GCTGATGTCTGGTACACGCAGTCAT
LOC_Os08g39470
OsAffx.17418.1.S1_at--989--9451Chr08:24840607..24840631 (25 bp)
TCTGGTACACGCAGTCATTCGGAGG
LOC_Os08g39470
OsAffx.17418.1.S1_at--289--2731NONE
AAGCACAAGTCTTCGAGTCAAGGTT
NONE
OsAffx.17418.1.S1_at--818--9571Chr08:24838900..24838924 (25 bp)
TCTTCGAGTCAAGGTTCGGTGTGGC
LOC_Os08g39470
OsAffx.17418.1.S1_at--1143--2851Chr08:24838890..24838914 (25 bp)
AAGGTTCGGTGTGGCGTCCGGCGAG
LOC_Os08g39470
OsAffx.17418.1.S1_at--436--1231Chr08:24838796..24838820 (25 bp)
AGTTGGTTCTAGGTCAGGGCAAGTA
LOC_Os08g39470
OsAffx.17418.1.S1_at--639--7111Chr08:24838784..24838808 (25 bp)
GTCAGGGCAAGTACCACGCCAGCGT
LOC_Os08g39470
OsAffx.17418.1.S1_at--895--2831Chr08:24838776..24838800 (25 bp)
AAGTACCACGCCAGCGTTCTATGCA
LOC_Os08g39470
OsAffx.17418.1.S1_at--1131--1631Chr08:24838764..24838788 (25 bp)
AGCGTTCTATGCACGCCTGGCTGGG
LOC_Os08g39470
OsAffx.17418.1.S1_at--878--8471Chr08:24838747..24838771 (25 bp)
TGGCTGGGCGTGAGCTACTCCAACA
LOC_Os08g39470
OsAffx.17418.1.S1_at--745--7571Chr08:24838742..24838766 (25 bp)
GGGCGTGAGCTACTCCAACACTTTC
LOC_Os08g39470
Target Sequence 
GCTGATGTCTGGTACACGCAGTCATTCGGAGGGGAGTGCGGATCATCGAGGCGGCGGAGGACGAGGGCTGGAAATCGGCG
CGGCGGCGGCGGAGGGAAGCACAAGTCTTCGAGTCAAGGTTCGGTGTGGCGTCCGGCGAGGTCCTCATCCCCCGCGCCCA
ACTCTGTCGCCGACGTCGAGCGCCCGCCGACCGCCGTCATCCGGCGGCGAGTTGGTTCTAGGTCAGGGCAAGTACCACGC
CAGCGTTCTATGCACGCCTGGCTGGGCGTGAGCTACTCCAACACTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis