Browse Element(s) Details


OsAffx.17453.1.S1_x_at

Description tigr:9636.m04184
TID=OsAffx.17453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4124011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os08g41260NANA8+25920151..25923460retrotransposon protein, putative, unclassified
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17453.1.S1_x_at--593--6511Chr08:25911698..25911722 (25 bp)
GATTCTCCCCGGTGGACATGTTCCA
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--1113--7511Chr08:25911687..25911711 (25 bp)
GTGGACATGTTCCAGCACCTGCTCG
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--604--8991Chr08:25911632..25911656 (25 bp)
TGAAGCTGCTGTCCACCAAGAAGCT
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--317--3791Chr08:25911606..25911630 (25 bp)
CTCGACAACGTCACGCCGGAGAACG
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--576--4491Chr08:25911579..25911603 (25 bp)
GCCGGGATCATCGTCTGCGCCGAGA
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--973--7951Chr08:25911575..25911599 (25 bp)
GGATCATCGTCTGCGCCGAGACGTA
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--644--7171Chr08:25911567..25911591 (25 bp)
GTCTGCGCCGAGACGTACGGCTGCC
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--824--2731Chr08:25911534..25911558 (25 bp)
AAGAAGAAGTGCCTCGACTACCTCG
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--464--1851Chr08:25911500..25911524 (25 bp)
ACGAACACTTCAGGAAGGCGGCGAC
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--427--7691Chr08:25911468..25911492 (25 bp)
GGGTACCTTCGATTGTTGCAGGATT
LOC_Os08g41240
OsAffx.17453.1.S1_x_at--714--8811Chr08:25911455..25911479 (25 bp)
TGTTGCAGGATTTCCCTTCCCTCAT
LOC_Os08g41240
Target Sequence 
GATTCTCCCCGGTGGACATGTTCCAGCACCTGCTCGCCGCGGCGGAGCGGTACGAGCTCGGCGGGCTGAAGCTGCTGTCC
ACCAAGAAGCTGCTCGACAACGTCACGCCGGAGAACGTCGCCGGGATCATCGTCTGCGCCGAGACGTACGGCTGCCCGGA
GCTGAAGAAGAAGTGCCTCGACTACCTCGCGCGCGAGGACGAACACTTCAGGAAGGCGGCGACGACGCAGGGGTACCTTC
GATTGTTGCAGGATTTCCCTTCCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17453.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis