Browse Element(s) Details


OsAffx.17464.1.S1_at

Description tigr:9636.m04244
TID=OsAffx.17464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4177011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41730Os.53150.1.S1_at10/118+26209510..26211681Proteasome subunit beta type 1, putative, expressed
LOC_Os08g41740OsAffx.6107.1.S1_at11/118+26212027..26214380hypothetical protein
LOC_Os08g41750OsAffx.17463.1.S1_at11/118+26218338..26219453F-box domain containing protein
LOC_Os08g41760OsAffx.6108.1.S1_at11/118+26223352..26224461F-box domain containing protein, expressed
LOC_Os08g41770OsAffx.17464.1.S1_at11/118+26234100..26235778hypothetical protein
LOC_Os08g41780Os.54937.1.S1_at11/118+26246575..26251798ab-hydrolase associated lipase region family protein, expressed
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17464.1.S1_at--933--951Chr08:26235705..26235729 (25 bp)
AGGACGTCGAGGAAGTTCGCCCAGA
LOC_Os08g41770
OsAffx.17464.1.S1_at--27--2991Chr08:26235598..26235622 (25 bp)
AATGTGCCGTTTGGCTTGGAGCAGC
LOC_Os08g41770
OsAffx.17464.1.S1_at--764--3371Chr08:26235577..26235601 (25 bp)
CAGCGGCGGTGGACTTGCCACTCAA
LOC_Os08g41770
OsAffx.17464.1.S1_at--528--9811Chr08:26235548..26235572 (25 bp)
TAACTCCACAGAGGTAGCGCTGGCC
LOC_Os08g41770
OsAffx.17464.1.S1_at--753--10631Chr08:26235486..26235510 (25 bp)
TTCGCGTCTACGATGCCGGTGAGGA
LOC_Os08g41770
OsAffx.17464.1.S1_at--479--991Chr08:26235462..26235486 (25 bp)
AGGATGCGATATTCCTGGCGCCGGC
LOC_Os08g41770
OsAffx.17464.1.S1_at--634--5811Chr08:26235431..26235455 (25 bp)
GACCCATGGCGATGCGCAGCATGGA
LOC_Os08g41770
OsAffx.17464.1.S1_at--739--1531Chr08:26235414..26235438 (25 bp)
AGCATGGAGGGCTGCCCACAGCGAT
LOC_Os08g41770
OsAffx.17464.1.S1_at--851--8471Chr08:26235369..26235393 (25 bp)
TGGCGTTCCGATCTGGACAGCGTCA
LOC_Os08g41770
OsAffx.17464.1.S1_at--1120--8111Chr08:26235220..26235244 (25 bp)
GGACTGGACGACAGAGATCGCGATC
LOC_Os08g41770
OsAffx.17464.1.S1_at--323--3672Chr01:36408516..36408545 (25 bp)
CTTATGAAGGCACGCACGCATACCC
NONE
Target Sequence 
AGGACGTCGAGGAAGTTCGCCCAGAGATCGGCGCCAGCGCCAGCGGCCTCCGTTTTTCTCTCTCCGCCGCCGTGGCGGTG
GCGGTGAAGTGGGAGTCACAGGTGTTGAATGTGCCGTTTGGCTTGGAGCAGCGGCGGTGGACTTGCCACTCAACCACTAA
CTCCACAGAGGTAGCGCTGGCCGCACGACAGCGACGGTGGGTTGCCCGAGGAGGAGATCTTCGCGTCTACGATGCCGGTG
AGGAGGATGCGATATTCCTGGCGCCGGCAGGGATGACCCATGGCGATGCGCAGCATGGAGGGCTGCCCACAGCGATGGGG
ACGACGGACAGAGGGTTGGCGTTCCGATCTGGACAGCGTCACCGGGGCGGCGGACTGGACGACAGAGATCGCGATCGGTG
TACGGGCGGCGTGGAGGCGGCGAACCAGCGAGGACGGGAAGATCCAAAGGGGAGAGGGAAAGTGGGAGTAAAACGTAGAC
ACTCACAACACACGCACACTCACCCTTATGAAGGCACGCACGCATACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis