Browse Element(s) Details


OsAffx.1755.1.S1_at

Description gb:NM_184025.1
DB_XREF= gi:34895177
GEN=B1051E10.25
TID=OsAffx.1755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1051E10.25 (B1051E10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g245942/11Coatomer delta subunit, putative, expressed
LOC_Os08g197502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g316102/11hypothetical protein
LOC_Os05g104402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g145902/11hypothetical protein
LOC_Os12g249802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24540OsAffx.27002.1.S1_at11/115+14078275..14078733hypothetical protein
LOC_Os05g24550Os.8744.1.S1_a_at6/115+14083606..14087136Papain family cysteine protease containing protein, expressed
LOC_Os05g24560NANA5+14087688..14090121NC domain-containing protein, putative, expressed
LOC_Os05g24570OsAffx.14807.1.S1_at11/115+14092869..14093741hypothetical protein
LOC_Os05g24580NANA5+14095652..14100295hypothetical protein
LOC_Os05g24594Os.7223.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594Os.9802.1.S1_at11/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24594OsAffx.1755.1.S1_x_at2/115+14103338..14119202Coatomer delta subunit, putative, expressed
LOC_Os05g24610OsAffx.8052.1.S1_at7/115+14120267..14127447retrotransposon protein, putative, LINE subclass
LOC_Os05g24620Os.14491.2.S1_x_at4/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g24620Os.47463.1.S1_x_at3/115+14140068..14149337transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1755.1.S1_at--165--4411Chr01:13955628..13956046 (25 bp)
GCCACAGCCACCACTCATCAATACA
NONE
OsAffx.1755.1.S1_at--558--33199Chr12:18475967..18475986 (20 bp)
CACTCATCAATACAACTACTCTCGG
NONE
OsAffx.1755.1.S1_at--126--20193Chr12:18475967..18475987 (21 bp)
ACTCATCAATACAACTACTCTCGGC
NONE
OsAffx.1755.1.S1_at--4--8971Chr01:13955536..13955560 (25 bp)
TGACACGGGGCTGCATCGGATTTCG
NONE
OsAffx.1755.1.S1_at--377--2172Chr02:15675153..15675314 (25 bp)
ACACGGGGCTGCATCGGATTTCGAT
NONE
OsAffx.1755.1.S1_at--975--9051Chr01:13955525..13955549 (25 bp)
TGCATCGGATTTCGATCTTCGACGA
NONE
OsAffx.1755.1.S1_at--801--4971Chr01:13955524..13955548 (25 bp)
GCATCGGATTTCGATCTTCGACGAA
NONE
OsAffx.1755.1.S1_at--1072--3531Chr01:13955523..13955547 (25 bp)
CATCGGATTTCGATCTTCGACGAAG
NONE
OsAffx.1755.1.S1_at--76--31Chr01:13955522..13955546 (25 bp)
ATCGGATTTCGATCTTCGACGAAGG
NONE
OsAffx.1755.1.S1_at--20--9431Chr01:13955521..13955545 (25 bp)
TCGGATTTCGATCTTCGACGAAGGG
NONE
OsAffx.1755.1.S1_at--218--3971Chr01:13955520..13955544 (25 bp)
CGGATTTCGATCTTCGACGAAGGGG
NONE
Target Sequence 
GCCACAGCCACCACTCATCAATACAACTACTCTCGGCGCATCGCCACCCTCTTTACCGAGGTTTTACTTATCAACCGGCG
GAATTTGGCACCTGACACGGGGCTGCATCGGATTTCGATCTTCGACGAAGGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis