Browse Element(s) Details


OsAffx.17572.1.S1_at

Description tigr:9637.m00352
TID=OsAffx.17572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0504010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04990Os.54379.1.S1_at11/119+2684795..2687286Cytoskeletal protein, putative, expressed
LOC_Os09g05000NANA9+2692800..2693939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05020Os.38393.1.S1_at11/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020Os.23189.1.S1_at10/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020OsAffx.6178.1.S1_at9/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05030Os.54128.1.S1_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05030Os.54128.1.S2_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05040OsAffx.17572.1.S1_at10/119+2710085..2711514hypothetical protein
LOC_Os09g05050NANA9+2715010..2715649retrotransposon, putative, centromere-specific
LOC_Os09g05060OsAffx.19542.3.S1_x_at3/119+2718889..2722767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05070OsAffx.8201.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05070OsAffx.22699.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05080NANA9+2730819..2736327retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17572.1.S1_at--530--4031NONE
CGATCGCAAGTTGGGAGCAGCAGCA
NONE
OsAffx.17572.1.S1_at--960--1511Chr09:2710586..2710610 (25 bp)
AGCAGCTAGCAGATGCGCGGGCAAC
LOC_Os09g05040
OsAffx.17572.1.S1_at--200--4611Chr09:2710554..2710578 (25 bp)
GCGACGGCGTAGATGACAATGTCCG
LOC_Os09g05040
OsAffx.17572.1.S1_at--285--10031Chr09:2710545..2710569 (25 bp)
TAGATGACAATGTCCGCGCGACGGT
LOC_Os09g05040
OsAffx.17572.1.S1_at--235--2991Chr09:2710537..2710561 (25 bp)
AATGTCCGCGCGACGGTGACTGCGC
LOC_Os09g05040
OsAffx.17572.1.S1_at--730--7531Chr09:2710498..2710522 (25 bp)
GTGGCTCACGACGAAAACCTCGACG
LOC_Os09g05040
OsAffx.17572.1.S1_at--1015--591Chr09:2710429..2710453 (25 bp)
ATGCCGCTGGCCAAATCCGCGCGAG
LOC_Os09g05040
OsAffx.17572.1.S1_at--677--4371Chr09:2710419..2710443 (25 bp)
CCAAATCCGCGCGAGGGCGGAGATC
LOC_Os09g05040
OsAffx.17572.1.S1_at--770--9991Chr09:2710263..2710287 (25 bp)
TAGCGCCGACGCAGACGACAGCGGC
LOC_Os09g05040
OsAffx.17572.1.S1_at--711--1731Chr09:2710221..2710245 (25 bp)
ACCTTGGCAAACACAGTCGATGGGC
LOC_Os09g05040
OsAffx.17572.1.S1_at--641--3931Chr09:2710170..2710194 (25 bp)
CGGCGTCGGATAGTGTTGACGAAAA
LOC_Os09g05040
Target Sequence 
CGATCGCAAGTTGGGAGCAGCAGCAGCTAGCAGATGCGCGGGCAACAGAGCCGGCGACGGCGTAGATGACAATGTCCGCG
CGACGGTGACTGCGCGGACGACAGCGGTGGTGGCTCACGACGAAAACCTCGACGACGACCCAGGGTGTGAAGGCGGAGGC
GGCGGCGGCCCCGAATCCATGCCGCTGGCCAAATCCGCGCGAGGGCGGAGATCGCGTGGAGGCGGCGGCGCGGCCCCGAA
TCCATGCCGCCGGCAAAATCCGCGCGGGGCGGAGATCGCGTGGAGGTGGCGAAGGGGTGGATGCCGCGCGGGGGCAGAGT
CCTCCAGACGACGGCAGCCGGGGCTAGCGCCGACGCAGACGACAGCGGCGGTGGTTGGCGATGATGACCTTGGCAAACAC
AGTCGATGGGCGACGACGAGCGTACGGGAGGCTGGGGCGGCGTCGGATAGTGTTGACGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis