Browse Element(s) Details


Os.38393.1.S1_at

Description gb:AK121831.1
DB_XREF= gi:37991454
TID=Os.38393.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099M08, full insert sequence.
FL= gb:AK121831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0502011/11tyrosine specific protein phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04970NANA9+2672952..2676041retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04980OsAffx.29724.4.S1_at1/119+2679970..2680590hypothetical protein
LOC_Os09g04990Os.54379.1.S1_at11/119+2684795..2687286Cytoskeletal protein, putative, expressed
LOC_Os09g05000NANA9+2692800..2693939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05020Os.38393.1.S1_at11/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020Os.23189.1.S1_at10/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020OsAffx.6178.1.S1_at9/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05030Os.54128.1.S1_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05030Os.54128.1.S2_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05040OsAffx.17572.1.S1_at10/119+2710085..2711514hypothetical protein
LOC_Os09g05050NANA9+2715010..2715649retrotransposon, putative, centromere-specific
LOC_Os09g05060OsAffx.19542.3.S1_x_at3/119+2718889..2722767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05070OsAffx.8201.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05070OsAffx.22699.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38393.1.S1_at--185--2711Chr09:2701125..2701149 (25 bp)
AAGCATTTACCAGCATCATTCTCAT
LOC_Os09g05020
Os.38393.1.S1_at--524--4351Chr09:2701168..2701192 (25 bp)
CCAGAGCAGCCTGTGTGCCAAGATT
LOC_Os09g05020
Os.38393.1.S1_at--983--6591Chr09:2701189..2701213 (25 bp)
GATTGGCAATTGTCTCTCGGTGACT
LOC_Os09g05020
Os.38393.1.S1_at--258--7771Chr09:2701207..2701231 (25 bp)
GGTGACTCTAGAGACCTGTTTATCA
LOC_Os09g05020
Os.38393.1.S1_at--306--10331Chr09:2701286..2701310 (25 bp)
TTTCATCATTATACTACTTCCCAGT
LOC_Os09g05020
Os.38393.1.S1_at--431--9891Chr09:2701300..2701324 (25 bp)
TACTTCCCAGTACATGTAGTCGCAA
LOC_Os09g05020
Os.38393.1.S1_at--54--4311Chr09:2701347..2701371 (25 bp)
GAATAGGTCCCGAGTTGTAGTTGAT
LOC_Os09g05020
Os.38393.1.S1_at--1121--7651Chr09:2701448..2701472 (25 bp)
GGGATGCATCGGGAGCTATACCATT
LOC_Os09g05020
Os.38393.1.S1_at--30--3991Chr09:2701457..2701481 (25 bp)
CGGGAGCTATACCATTGTTGTTTCT
LOC_Os09g05020
Os.38393.1.S1_at--765--6631Chr09:2701473..2701497 (25 bp)
GTTGTTTCTGCGTTAGCAGTACCAG
LOC_Os09g05020
Os.38393.1.S1_at--414--3251Chr09:2701602..2701626 (25 bp)
CAAGCCCTTGACTGAATGTGTGTAA
LOC_Os09g05020
Target Sequence 
AAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTC
TCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTG
TTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTANCATTTTTGGAGAATAGGTCCCGAGTTGT
AGTTGATGTTAAAGGGCATAGAAACCGGNTCGGTTGCCAATGCAGTTCACTGTATNAGTNCAGTGTTTTTCAAGCGAATA
AGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATT
TTTTATATGTTGTAATNATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAANNANNATGGCCCTTCAA
GCCCTTGACTGAATGTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis