Browse Element(s) Details


OsAffx.17573.1.S1_at

Description tigr:9637.m00389
TID=OsAffx.17573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0634011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06310OsAffx.6184.1.S1_at11/119+2953032..2953319hypothetical protein
LOC_Os09g06320OsAffx.17574.1.S1_at10/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06320OsAffx.19675.1.S1_at3/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06320OsAffx.19675.1.S1_x_at3/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06330NANA9+2969963..2972205hypothetical protein
LOC_Os09g06340OsAffx.17573.1.S1_at11/119+2975750..2976142hypothetical protein
LOC_Os09g06350OsAffx.19542.3.S1_x_at5/119+2982082..2987613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g06350OsAffx.21754.1.S1_x_at2/119+2982082..2987613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g06350OsAffx.485.1.S1_at1/119+2982082..2987613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g06360NANA9+2991210..2992477hypothetical protein
LOC_Os09g06370NANA9+2993251..2995152Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17573.1.S1_at--994--4391Chr09:2975785..2975809 (25 bp)
GCCAACATACGGTCGCTATCTGAAG
LOC_Os09g06340
OsAffx.17573.1.S1_at--175--2211Chr09:2975823..2975847 (25 bp)
ACAAGAGGCTACTGCTTACCACGGG
LOC_Os09g06340
OsAffx.17573.1.S1_at--368--6251Chr09:2975848..2975872 (25 bp)
GATGGTCAAGTTAACAGAGGAGTGT
LOC_Os09g06340
OsAffx.17573.1.S1_at--176--6931Chr09:2975871..2975895 (25 bp)
GTAGTAATGTTATACTCCACTGGCT
LOC_Os09g06340
OsAffx.17573.1.S1_at--83--9731Chr09:2975939..2975963 (25 bp)
TCAATTGGGACGCAACACTTGGACC
LOC_Os09g06340
OsAffx.17573.1.S1_at--269--5151Chr09:2975950..2975974 (25 bp)
GCAACACTTGGACCAGGCCTTATGT
LOC_Os09g06340
OsAffx.17573.1.S1_at--756--7271Chr09:2975988..2976012 (25 bp)
GTGCCAGCGTCGTGCCAAAGGACAT
LOC_Os09g06340
OsAffx.17573.1.S1_at--952--9371Chr09:2976015..2976039 (25 bp)
TCGAGAAGCTGAATTACACGGTGTT
LOC_Os09g06340
OsAffx.17573.1.S1_at--17--3851Chr09:2976023..2976047 (25 bp)
CTGAATTACACGGTGTTGGTGCCAA
LOC_Os09g06340
OsAffx.17573.1.S1_at--528--7791Chr09:2976040..2976064 (25 bp)
GGTGCCAACACCAATGAGGCTCCGA
LOC_Os09g06340
OsAffx.17573.1.S1_at--1000--2971Chr09:2976052..2976076 (25 bp)
AATGAGGCTCCGACTGGCCGACTCC
LOC_Os09g06340
Target Sequence 
GCCAACATACGGTCGCTATCTGAAGGACATCCTGAATAACAAGAGGCTACTGCTTACCACGGGGATGGTCAAGTTAACAG
AGGAGTGTAGTAATGTTATACTCCACTGGCTCCTGGAAAAGAAGAAGGATCCGGGTTGTACCACAATCTCATGCTCAATT
GGGACGCAACACTTGGACCAGGCCTTATGTGATCTTGGAGCAAGTGCCAGCGTCGTGCCAAAGGACATTTTCGAGAAGCT
GAATTACACGGTGTTGGTGCCAACACCAATGAGGCTCCGACTGGCCGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis