Browse Element(s) Details


OsAffx.6184.1.S1_at

Description tigr:9637.m00393
TID=OsAffx.6184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0631011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06240NANA9+2932916..2933486hypothetical protein
LOC_Os09g06250Os.32672.1.S1_x_at1/119+2936672..2938345hypothetical protein
LOC_Os09g06260NANA9+2938928..2940727retrotransposon protein, putative, unclassified
LOC_Os09g06270OsAffx.30891.1.S1_x_at3/119+2942022..2945045retrotransposon protein, putative, unclassified
LOC_Os09g06280NANA9+2945374..2945856Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06290OsAffx.15648.1.S1_at1/119+2946031..2947470Zinc knuckle family protein
LOC_Os09g06300OsAffx.1196.1.S1_at2/119+2948261..2949567hypothetical protein
LOC_Os09g06300OsAffx.1196.1.S1_x_at1/119+2948261..2949567hypothetical protein
LOC_Os09g06310OsAffx.6184.1.S1_at11/119+2953032..2953319hypothetical protein
LOC_Os09g06320OsAffx.17574.1.S1_at10/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06320OsAffx.19675.1.S1_at3/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06320OsAffx.19675.1.S1_x_at3/119+2964732..2967345retrotransposon, putative, centromere-specific
LOC_Os09g06330NANA9+2969963..2972205hypothetical protein
LOC_Os09g06340OsAffx.17573.1.S1_at11/119+2975750..2976142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6184.1.S1_at--100--5951Chr09:2953079..2953103 (25 bp)
GAGCAGCGTCGGTGGTTGGATTGGG
LOC_Os09g06310
OsAffx.6184.1.S1_at--47--7871Chr09:2953092..2953116 (25 bp)
GGTTGGATTGGGAGTCCGCCGCGTG
LOC_Os09g06310
OsAffx.6184.1.S1_at--431--6111Chr09:2953117..2953141 (25 bp)
GAGTCCTCCCTACGCCAACAACGGT
LOC_Os09g06310
OsAffx.6184.1.S1_at--116--11Chr09:2953137..2953161 (25 bp)
ACGGTTCAACGGAGGCGGAACATCG
LOC_Os09g06310
OsAffx.6184.1.S1_at--287--5491Chr09:2953154..2953178 (25 bp)
GAACATCGCGCGGAGCGGGCACCTC
LOC_Os09g06310
OsAffx.6184.1.S1_at--750--8371Chr09:2953187..2953211 (25 bp)
GGCGACGTCGGATGACCTCCCAGAG
LOC_Os09g06310
OsAffx.6184.1.S1_at--576--7991Chr09:2953196..2953220 (25 bp)
GGATGACCTCCCAGAGCCAGCAGAG
LOC_Os09g06310
OsAffx.6184.1.S1_at--812--1751Chr09:2953201..2953225 (25 bp)
ACCTCCCAGAGCCAGCAGAGGAGAC
LOC_Os09g06310
OsAffx.6184.1.S1_at--593--9771Chr09:2953256..2953280 (25 bp)
TAACCCTAAATGCACCTCAAATCGC
LOC_Os09g06310
OsAffx.6184.1.S1_at--136--9851Chr09:2953262..2953286 (25 bp)
TAAATGCACCTCAAATCGCGGAGAC
LOC_Os09g06310
OsAffx.6184.1.S1_at--791--631Chr09:2953265..2953289 (25 bp)
ATGCACCTCAAATCGCGGAGACGAA
LOC_Os09g06310
Target Sequence 
GAGCAGCGTCGGTGGTTGGATTGGGAGTCCGCCGCGTGGAGTCCTCCCTACGCCAACAACGGTTCAACGGAGGCGGAACA
TCGCGCGGAGCGGGCACCTCCCGGCGACGGCGACGTCGGATGACCTCCCAGAGCCAGCAGAGGAGACGAGCGGCGTCGGC
GGTTGGATAGGGAACCCTAACCCTAAATGCACCTCAAATCGCGGAGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis