Browse Element(s) Details


OsAffx.17683.1.S1_at

Description tigr:9637.m01070
TID=OsAffx.17683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1338011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13340OsAffx.32056.1.S1_x_at11/119+7692090..7695244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13340OsAffx.32056.1.S1_at2/119+7692090..7695244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13350NANA9+7705313..7708603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13360NANA9+7710293..7712467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13370Os.14491.2.S1_x_at3/119+7712929..7715136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13370Os.47463.1.S1_x_at3/119+7712929..7715136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13380OsAffx.17683.1.S1_at11/119+7716496..7719777hypothetical protein
LOC_Os09g13390OsAffx.29830.1.S1_at11/119+7726035..7726335hypothetical protein
LOC_Os09g13400OsAffx.29831.1.S1_at10/119+7740162..7743069expressed protein
LOC_Os09g13400OsAffx.29831.1.S1_s_at3/119+7740162..7743069expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17683.1.S1_at--256--5791Chr09:7718817..7718841 (25 bp)
GACGAACATTGGTGTCGCATCGACC
LOC_Os09g13380
OsAffx.17683.1.S1_at--978--4071Chr09:7718797..7718821 (25 bp)
CGACCAACGGTACTGATCTAATTAA
LOC_Os09g13380
OsAffx.17683.1.S1_at--997--10471Chr09:7718776..7718800 (25 bp)
TTAAACCACATGAGACGGGCGTCCA
LOC_Os09g13380
OsAffx.17683.1.S1_at--1085--3431Chr09:7718753..7718777 (25 bp)
CAGTTCTCCACTTGGGCCCAAAAAG
LOC_Os09g13380
OsAffx.17683.1.S1_at--8--2191Chr09:7718242..7718266 (25 bp)
ACACATGGAAGCTCGCAGGTTGCAC
LOC_Os09g13380
OsAffx.17683.1.S1_at--942--5011Chr09:7718228..7718252 (25 bp)
GCAGGTTGCACGTGCTCGAAACAGT
LOC_Os09g13380
OsAffx.17683.1.S1_at--1105--3771Chr09:7718214..7718238 (25 bp)
CTCGAAACAGTGATGGGCCGCCGGC
LOC_Os09g13380
OsAffx.17683.1.S1_at--877--2751Chr09:7716993..7717017 (25 bp)
AAGACAGCCGCTAGGTTGTGGTTGA
LOC_Os09g13380
OsAffx.17683.1.S1_at--401--7971Chr09:7716882..7716906 (25 bp)
GGATCTGCGATGGATCATCTCTCCA
LOC_Os09g13380
OsAffx.17683.1.S1_at--66--6751Chr09:7716643..7716667 (25 bp)
GTTCAGCTTTTACACTGTTGATCGA
LOC_Os09g13380
OsAffx.17683.1.S1_at--914--10855Chr12:16730449..16730470 (22 bp)
TTGGTTTTCCCATCATATTCTCAGA
NONE
Target Sequence 
GACGAACATTGGTGTCGCATCGACCAACGGTACTGATCTAATTAAACCACATGAGACGGGCGTCCAGTTCTCCACTTGGG
CCCAAAAAGAGAACGGAAAGCAACACATGGAAGCTCGCAGGTTGCACGTGCTCGAAACAGTGATGGGCCGCCGGCGTCAC
CAGTCGACGGAGGTGCTTAAGAAGAAGACAGCCGCTAGGTTGTGGTTGAAGCTGGAACAGATATGCAAGACTAAGGATCT
AACTAGTAAGATGCACCGGAAGCAAAAGTTATTTTTGCACAAGTTGCAAGATGATGGATCTGCGATGGATCATCTCTCCA
CTTTCAAGAAAATTGTTGCTAACCTTGAGTCTATGGAGTGTATTTGGGGAAATCTTAGAACAAACGTGCAAAAGTTCAGC
TTTTACACTGTTGATCGAATAGGCGATCAGGAATCTGATTGGAAAAAACGGATTGAGGAAGACAAGAGGAGCAGGAGGAG
TGGTGGGTTGGTTTTCCCATCATATTCTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis