Browse Element(s) Details


OsAffx.17718.1.A1_at

Description tigr:9637.m01287
TID=OsAffx.17718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g252503/11ZIM motif family protein
LOC_Os01g670801/11hypothetical protein
LOC_Os05g394401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed
LOC_Os10g25220Os.46688.1.S1_x_at9/1110+12687132..12691819SAP domain containing protein, expressed
LOC_Os10g25230Os.46849.1.S1_at11/1110+12699796..12700622ZIM motif family protein, expressed
LOC_Os10g25250OsAffx.30526.1.S1_x_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.30526.1.S1_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.17718.1.A1_at3/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.11600.1.S1_at1/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25260OsAffx.25647.1.S1_x_at9/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.1.S1_at8/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.2.S1_at3/1110+12720484..12722196hypothetical protein
LOC_Os10g25270OsAffx.20387.1.S1_x_at11/1110+12727647..12728284retrotransposon protein, putative, unclassified
LOC_Os10g25280NANA10+12728537..12731704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17718.1.A1_at--409--36715Chr11:20887407..20887426 (20 bp)
CTTTGTTCATCTGGATCACACAAGT
NONE
OsAffx.17718.1.A1_at--881--10791Chr09:9503470..9503494 (25 bp)
TTGTTCATCTGGATCACACAAGTAT
NONE
OsAffx.17718.1.A1_at--956--6734Chr11:4343611..4343634 (24 bp)
GTTCATCTGGATCACACAAGTATAA
NONE
OsAffx.17718.1.A1_at--461--35313Chr11:4343613..4343637 (25 bp)
CATCTGGATCACACAAGTATAATAT
NONE
OsAffx.17718.1.A1_at--1146--3211Chr09:9503452..9503476 (25 bp)
CAAGTATAATATTTGGCGGCATAGA
NONE
OsAffx.17718.1.A1_at--337--1191Chr09:9503450..9503474 (25 bp)
AGTATAATATTTGGCGGCATAGATA
NONE
OsAffx.17718.1.A1_at--753--357Chr12:18534139..18534161 (23 bp)
ATAACCAACATGTAGTCGACGATAT
NONE
OsAffx.17718.1.A1_at--252--2654Chr12:18534140..18534161 (22 bp)
AACCAACATGTAGTCGACGATATGG
NONE
OsAffx.17718.1.A1_at--613--4372Chr12:18534142..18534459 (25 bp)
CCAACATGTAGTCGACGATATGGTA
NONE
OsAffx.17718.1.A1_at--12--3452Chr09:9503420..9503444 (25 bp)
CATGTAGTCGACGATATGGTAGTCT
NONE
OsAffx.17718.1.A1_at--158--272Chr09:9503419..9503443 (25 bp)
ATGTAGTCGACGATATGGTAGTCTT
NONE
Target Sequence 
CTTTGTTCATCTGGATCACACAAGTATAATATTTGGCGGCATAGATAACCAACATGTAGTCGACGATATGGTAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17718.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis