Browse Element(s) Details


OsAffx.17769.1.S1_at

Description tigr:9637.m01571
TID=OsAffx.17769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1826011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18240NANA9+11193214..11199977retrotransposon protein, putative, unclassified
LOC_Os09g18250OsAffx.29911.1.S1_at11/119+11200494..11203190hypothetical protein
LOC_Os09g18260OsAffx.17769.1.S1_at11/119+11206999..11212451Protein kinase domain containing protein
LOC_Os09g18270NANA9+11215489..11216154transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18280NANA9+11217863..11218896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18290NANA9+11219542..11220242hypothetical protein
LOC_Os09g18300OsAffx.29910.1.S1_at11/119+11225371..11225772hypothetical protein
LOC_Os09g18310OsAffx.17770.1.S1_x_at10/119+11231463..11232157retrotransposon, putative, centromere-specific
LOC_Os09g18320Os.18949.1.S1_at10/119+11235232..11239921Bystin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17769.1.S1_at--220--2371Chr09:11207557..11207581 (25 bp)
AAACCTATCATAGCGACTCTCAAAC
LOC_Os09g18260
OsAffx.17769.1.S1_at--1115--9991Chr09:11207547..11207571 (25 bp)
TAGCGACTCTCAAACTCACATATCA
LOC_Os09g18260
OsAffx.17769.1.S1_at--410--9651Chr09:11207525..11207549 (25 bp)
TCAGCTAGTATTGCAGCTGGATCTA
LOC_Os09g18260
OsAffx.17769.1.S1_at--965--1711Chr09:11207361..11207385 (25 bp)
ACCACCGGCAGGCTCACTGAGAGCA
LOC_Os09g18260
OsAffx.17769.1.S1_at--1022--9951Chr09:11207276..11207300 (25 bp)
TACCTGGAAATGGACACGTTGTTCA
LOC_Os09g18260
OsAffx.17769.1.S1_at--795--7091Chr09:11207232..11207256 (25 bp)
GTCACAGGTAACATCAGCTCTATTG
LOC_Os09g18260
OsAffx.17769.1.S1_at--127--1591Chr09:11207217..11207241 (25 bp)
AGCTCTATTGTTGATACACGTCTTG
LOC_Os09g18260
OsAffx.17769.1.S1_at--76--1851Chr09:11207200..11207224 (25 bp)
ACGTCTTGGAGGTTCCTATAATGTT
LOC_Os09g18260
OsAffx.17769.1.S1_at--128--3111Chr09:11207130..11207154 (25 bp)
AATATTGCTGCTGAAAGGCCAACAA
LOC_Os09g18260
OsAffx.17769.1.S1_at--291--2231Chr09:11207109..11207133 (25 bp)
ACAATGGCTACAGTGGTTATGCAAC
LOC_Os09g18260
OsAffx.17769.1.S1_at--465--2651Chr09:11207031..11207055 (25 bp)
AACCAAGCAAGGGATAACACATATT
LOC_Os09g18260
Target Sequence 
AAACCTATCATAGCGACTCTCAAACTCACATATCAGCTAGTATTGCAGCTGGATCTATGGGTTATATTGACCCTGAGTAC
TACACCACCGGCAGGCTCACTGAGAGCAGTGATGTCTATAGCTTCGGTGTTGTTTTACTGGAGGTAACTACCGGTGAACC
TCCCATAATACCTGGAAATGGACACGTTGTTCAGCGTGTGAAGCAGAAGATTGTCACAGGTAACATCAGCTCTATTGTTG
ATACACGTCTTGGAGGTTCCTATAATGTTAGCTCCATGTGGAAGGTTCTAGATGCTGCCATGATGTGCACAACAAATATT
GCTGCTGAAAGGCCAACAATGGCTACAGTGGTTATGCAACTGAAGGAAAGTCTAGAATTAGAGGAAGCTCATGGTGAAAG
GGGTGATATGGAAAACCAAGCAAGGGATAACACATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis