Browse Element(s) Details


OsAffx.29911.1.S1_at

Description tigr:9637.m01570
TID=OsAffx.29911.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1825011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18230OsAffx.28116.1.S1_s_at1/119+11170638..11180037Protein kinase domain containing protein, expressed
LOC_Os09g18230Os.26918.1.A1_at1/119+11170638..11180037Protein kinase domain containing protein, expressed
LOC_Os09g18240NANA9+11193214..11199977retrotransposon protein, putative, unclassified
LOC_Os09g18250OsAffx.29911.1.S1_at11/119+11200494..11203190hypothetical protein
LOC_Os09g18260OsAffx.17769.1.S1_at11/119+11206999..11212451Protein kinase domain containing protein
LOC_Os09g18270NANA9+11215489..11216154transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18280NANA9+11217863..11218896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18290NANA9+11219542..11220242hypothetical protein
LOC_Os09g18300OsAffx.29910.1.S1_at11/119+11225371..11225772hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29911.1.S1_at--471--7251Chr09:11202647..11202671 (25 bp)
GTCCCCTTGACTTATTTTGTCAGCA
LOC_Os09g18250
OsAffx.29911.1.S1_at--852--2991Chr09:11201904..11201928 (25 bp)
AATGAGGGTGGCAGTTCTTACGATT
LOC_Os09g18250
OsAffx.29911.1.S1_at--42--3451Chr09:11201893..11201917 (25 bp)
CAGTTCTTACGATTGGAGTGCTGAA
LOC_Os09g18250
OsAffx.29911.1.S1_at--2--7831Chr09:11201868..11201892 (25 bp)
GGTAGCCAACCCGAAAATCTGAGCA
LOC_Os09g18250
OsAffx.29911.1.S1_at--29--8071Chr09:11201671..11201854 (25 bp)
GGAGAAGCTACTGACTTCACTTCAG
LOC_Os09g18250
OsAffx.29911.1.S1_at--402--8951Chr09:11201660..11201683 (24 bp)
TGACTTCACTTCAGATCGCACTCAA
LOC_Os09g18250
OsAffx.29911.1.S1_at--214--1291Chr09:11201648..11201672 (25 bp)
AGATCGCACTCAAATTTGGCTCATG
LOC_Os09g18250
OsAffx.29911.1.S1_at--1142--10231Chr09:11201634..11201658 (25 bp)
TTTGGCTCATGCATCATTGGTCCAC
LOC_Os09g18250
OsAffx.29911.1.S1_at--273--2711Chr09:11201586..11201610 (25 bp)
AAGCTTGCTGGCTGTGTAAGCTATA
LOC_Os09g18250
OsAffx.29911.1.S1_at--927--7731Chr09:11201545..11201565 (21 bp)
GGTGTCAACGCTGAGGACAAGAACT
LOC_Os09g18250
OsAffx.29911.1.S1_at--1109--2211Chr09:11201235..11201256 (22 bp)
ACAAGAACTGTGTCTCTCAAGTGAA
LOC_Os09g18250
Target Sequence 
GTCCCCTTGACTTATTTTGTCAGCAATGAAGGGAGCATGGATGGAAGTGGGTATTTTACAAACTTGGTAAATGAGGGTGG
CAGTTCTTACGATTGGAGTGCTGAAGGTAGCCAACCCGAAAATCTGAGCAACAATTCGAGGAAGGAGAAGCTACTGACTT
CACTTCAGATCGCACTCAAATTTGGCTCATGCATCATTGGTCCACTATACAAGAGTGTGTCAATTAATAAGCTTGCTGGC
TGTGTAAGCTATATTGAGAATAGACCTCAAAGTGGTGTCAACGCTGAGGACAAGAACTGTGTCTCTCAAGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis