Browse Element(s) Details


Os.26918.1.A1_at

Description gb:CB631541
DB_XREF= gi:29626530
DB_XREF=OSIIEb09C05.r
CLONE=OSIIEb09C05
TID=Os.26918.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26918 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188771.1 (A.thaliana) serinethreonine-specific protein kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g182301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18190OsAffx.29910.1.S1_at11/119+11148496..11148897hypothetical protein
LOC_Os09g18200OsAffx.17770.1.S1_x_at5/119+11152501..11157725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g18200OsAffx.31892.2.S1_x_at1/119+11152501..11157725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g18210OsAffx.32056.1.S1_x_at9/119+11158576..11161893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18210OsAffx.32056.1.S1_at2/119+11158576..11161893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18220OsAffx.10637.1.S1_s_at10/119+11164051..11167208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18220OsAffx.10637.4.S1_s_at9/119+11164051..11167208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18220OsAffx.10637.3.S1_s_at9/119+11164051..11167208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18230OsAffx.28116.1.S1_s_at1/119+11170638..11180037Protein kinase domain containing protein, expressed
LOC_Os09g18230Os.26918.1.A1_at1/119+11170638..11180037Protein kinase domain containing protein, expressed
LOC_Os09g18240NANA9+11193214..11199977retrotransposon protein, putative, unclassified
LOC_Os09g18250OsAffx.29911.1.S1_at11/119+11200494..11203190hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26918.1.A1_at--909--91NONE
ATTCGCGTCTTGATGCCTACAATGT
NONE
Os.26918.1.A1_at--47--8211Chr09:11170805..11170828 (24 bp)
GGAAGGTTGTTGACACTGCCATGAG
LOC_Os09g18230
Os.26918.1.A1_at--376--1991NONE
ACTGCCATGAGGTGCACTGCTGATG
NONE
Os.26918.1.A1_at--249--9091NONE
TGCTACTCAAAGACCAGTGATGGCC
NONE
Os.26918.1.A1_at--63--891NONE
AGGCCTAGCTTTGGAGGACGCTCAT
NONE
Os.26918.1.A1_at--1050--7791NONE
GGTCGACCACGAAAACATAGCAAGT
NONE
Os.26918.1.A1_at--536--291NONE
ATAGCAAGTGATACCGCGTCTTCCA
NONE
Os.26918.1.A1_at--1092--6471NONE
GATACCGCGTCTTCCATGTCAAAAT
NONE
Os.26918.1.A1_at--782--2751NONE
AAGAAAGTGTACGTGCGCCTGGCTT
NONE
Os.26918.1.A1_at--620--10691NONE
TTGCCACGTCAATTCTCTGCTATAA
NONE
Os.26918.1.A1_at--628--8031NONE
GGAGTGCTTAATTCCTTGCAATATA
NONE
Target Sequence 
ATTCGCGTCTTGATGCCTACAATGTCAGCTCTATGTGGAAGGTTGTTGACACTGCCATGAGGTGCACTGCTGATGTTGCT
ACTCAAAGACCAGTGATGGCCACTGTGGTTGCACAACTTAAGGAAGGCCTAGCTTTGGAGGACGCTCATGAGGAAAGGGT
CGACCACGAAAACATAGCAAGTGATACCGCGTCTTCCATGTCAAAATTTGGTCCTTCACCAAGATGAAGAAAGTGTACGT
GCGCCTGGCTTTGCCACGTCAATTCTCTGCTATAAGTGTAAAATGATATGACAAACGCAGTAATTTATACAACAGGTATT
CATAAACAAAGATGGTTCGACAGAACCAAAATAGGAGTGCTTAATTCCTTGCAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26918.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis