Browse Element(s) Details


OsAffx.17772.1.S1_at

Description tigr:9637.m01587
TID=OsAffx.17772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18370Os.47463.1.S1_x_at6/119+11273886..11277583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18370Os.14491.2.S1_x_at5/119+11273886..11277583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18380NANA9+11280227..11283533transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18390OsAffx.17771.1.S1_at4/119+11287811..11289840Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os09g18400OsAffx.29914.1.S1_at10/119+11291525..11292537hypothetical protein
LOC_Os09g18410OsAffx.29915.1.S1_at11/119+11294780..11297489hypothetical protein
LOC_Os09g18420OsAffx.17772.1.S1_at11/119+11298244..11298945hypothetical protein
LOC_Os09g18430NANA9+11301964..11303307transposon protein, putative, Pong sub-class
LOC_Os09g18440NANA9+11303719..11305889transposon protein, putative, Pong sub-class
LOC_Os09g18450OsAffx.6325.1.S1_at11/119+11308092..11309728oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os09g18460NANA9+11315493..11315974hypothetical protein
LOC_Os09g18470OsAffx.29917.1.S1_at11/119+11319294..11321988oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os09g18480OsAffx.15708.1.S1_at1/119+11323823..11325091retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17772.1.S1_at--37--391Chr09:11298835..11298859 (25 bp)
ATCACATAGCAAGGTTGGATCCAGT
LOC_Os09g18420
OsAffx.17772.1.S1_at--31--531Chr09:11298787..11298811 (25 bp)
ATCGAAGGCAATCGGCTTGGCTGTC
LOC_Os09g18420
OsAffx.17772.1.S1_at--957--4931Chr09:11298773..11298797 (25 bp)
GCTTGGCTGTCAATGCGACGAAGGA
LOC_Os09g18420
OsAffx.17772.1.S1_at--608--8291Chr09:11298741..11298765 (25 bp)
GGCTTGGCTGTCAACTTCAACAAGT
LOC_Os09g18420
OsAffx.17772.1.S1_at--426--3271Chr09:11298724..11298748 (25 bp)
CAACAAGTGTTCCATCACTCTACTT
LOC_Os09g18420
OsAffx.17772.1.S1_at--495--9891Chr09:11298704..11298728 (25 bp)
TACTTCACTATTCCAAGGCACAGGT
LOC_Os09g18420
OsAffx.17772.1.S1_at--38--10491Chr09:11298671..11298695 (25 bp)
TTACAGAGTTGTTGGGTTGTCCGGT
LOC_Os09g18420
OsAffx.17772.1.S1_at--657--7771Chr09:11298649..11298673 (25 bp)
GGTGAAGCAGCTCCCTATCGTCTAC
LOC_Os09g18420
OsAffx.17772.1.S1_at--374--711Chr09:11298466..11298597 (25 bp)
ATGATGGACCGTTCTGGAGCTGCCA
LOC_Os09g18420
OsAffx.17772.1.S1_at--91--9191Chr09:11298446..11298470 (25 bp)
TGCCAGTCTGGCAATCGAGGAAACA
LOC_Os09g18420
OsAffx.17772.1.S1_at--367--2211Chr09:11298347..11298371 (25 bp)
ACAAGCTGTGTCTCCCGTTTGGCAA
LOC_Os09g18420
Target Sequence 
ATCACATAGCAAGGTTGGATCCAGTGAAGTGTGGTTAGGTGCGAGACTATCGAAGGCAATCGGCTTGGCTGTCAATGCGA
CGAAGGAGGCAATCGGCTTGGCTGTCAACTTCAACAAGTGTTCCATCACTCTACTTCACTATTCCAAGGCACAGGTTGCA
GAGGTTACAGAGTTGTTGGGTTGTCCGGTGAAGCAGCTCCCTATCGTCTACCTCAGGCTCCCCCTCTCGGTTTGCAAACT
AACTAAAGCGGAGATTCTGCTTATGATGGACCGTTCTGGAGCTGCCAGTCTGGCAATCGAGGAAACAGAGAAAAAAATGT
CGGGGGTTCCTTTGGAAGGGCGACGAGAACGCAGCAGGCGGTTGCAGCCTCATCGCTTGCAACAAGCTGTGTCTCCCGTT
TGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis