Browse Element(s) Details


OsAffx.29917.1.S1_at

Description tigr:9637.m01592
TID=OsAffx.29917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1847011/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18410OsAffx.29915.1.S1_at11/119+11294780..11297489hypothetical protein
LOC_Os09g18420OsAffx.17772.1.S1_at11/119+11298244..11298945hypothetical protein
LOC_Os09g18430NANA9+11301964..11303307transposon protein, putative, Pong sub-class
LOC_Os09g18440NANA9+11303719..11305889transposon protein, putative, Pong sub-class
LOC_Os09g18450OsAffx.6325.1.S1_at11/119+11308092..11309728oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os09g18460NANA9+11315493..11315974hypothetical protein
LOC_Os09g18470OsAffx.29917.1.S1_at11/119+11319294..11321988oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os09g18480OsAffx.15708.1.S1_at1/119+11323823..11325091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g18490Os.45976.1.S1_x_at3/119+11331584..11335336transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18500Os.46306.1.S1_x_at2/119+11337814..11340899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18510NANA9+11342164..11343633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29917.1.S1_at--1043--2811Chr09:11321402..11321425 (24 bp)
AAGTTGCTCATCTACCAAGGATCAT
LOC_Os09g18470
OsAffx.29917.1.S1_at--898--7651Chr09:11321429..11321453 (25 bp)
GGGATTCAATCGACAAGTACACAGT
LOC_Os09g18470
OsAffx.29917.1.S1_at--281--3031Chr09:11321472..11321496 (25 bp)
AATGCGACTGCTAAGGTTTATGGCC
LOC_Os09g18470
OsAffx.29917.1.S1_at--924--8431Chr09:11321493..11321517 (25 bp)
GGCCAGCGACCTTGGTGTTGAGCAA
LOC_Os09g18470
OsAffx.29917.1.S1_at--726--10611Chr09:11321629..11321653 (25 bp)
TTCGGGCTGACTCTACTGCTGCAAG
LOC_Os09g18470
OsAffx.29917.1.S1_at--836--1971Chr09:11321643..11321667 (25 bp)
ACTGCTGCAAGTCGATGACACGCCG
LOC_Os09g18470
OsAffx.29917.1.S1_at--923--371Chr09:11321731..11321755 (25 bp)
ATCAACATCGGCGAGACCCTCGAGG
LOC_Os09g18470
OsAffx.29917.1.S1_at--768--2951Chr09:11321764..11321788 (25 bp)
AATGGCCTCTACAGGAGCGTGTTCC
LOC_Os09g18470
OsAffx.29917.1.S1_at--354--10751Chr09:11321801..11321825 (25 bp)
TTGACACTGAGAGGGACCGGGTTAC
LOC_Os09g18470
OsAffx.29917.1.S1_at--246--8671Chr09:11321829..11321853 (25 bp)
TGTGGTGTTTCAAGACGTGTGTATC
LOC_Os09g18470
OsAffx.29917.1.S1_at--435--9711Chr09:11321924..11321948 (25 bp)
TCAAGGGCCACACAACAGAAGTAGT
LOC_Os09g18470
Target Sequence 
AAGTTGCTCATCTACCAAGGATCATTCAGGGATTCAATCGACAAGTACACAGTGGAGATGTCGAATCTGACAATGCGACT
GCTAAGGTTTATGGCCAGCGACCTTGGTGTTGAGCAAGAACCGCTGCTCGCCGCCTTCCGCGGGAAGCGGCAGAGCACTG
CCCTGCACCACTACCCTCCTTGCCGCCACCCGGAGAAGGTGATCGGCATCGCGCCGCACTCCGACGGCTTCGGGCTGACT
CTACTGCTGCAAGTCGATGACACGCCGGGCCTGCAGGTTAGCAACGGCGGCCGGTGGCATCCGGTGCGGCCGCTGCCAGG
TGCCTTCATCATCAACATCGGCGAGACCCTCGAGGTTCTCACCAATGGCCTCTACAGGAGCGTGTTCCATAGGGTGGTCG
TTGACACTGAGAGGGACCGGGTTACAGTTGTGGTGTTTCAAGACGTGTGTATCGATGGAGTGTTGAAGCCACTACCGGAG
CTCGGCGAGCCGCGATATCATGCGATCGGCAAGTCGGAGTATTTCAAGGGCCACACAACAGAAGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis