Browse Element(s) Details


OsAffx.17785.1.S1_x_at

Description tigr:9637.m01662
TID=OsAffx.17785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1966011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19640Os.10755.1.S1_at11/119+11734361..11739274holocarboxylase synthetase, putative, expressed
LOC_Os09g19650Os.54509.1.S1_at11/119+11742856..11748578fatty acid elongase, putative, expressed
LOC_Os09g19660OsAffx.17785.1.S1_x_at11/119+11760978..11761366NA
LOC_Os09g19670Os.14058.1.S1_at1/119+11766727..11770432retrotransposon protein, putative, unclassified
LOC_Os09g19680Os.10380.1.S1_at4/119+11777331..11784017ABC-type transport protein, putative, expressed
LOC_Os09g19690OsAffx.6336.1.S1_at11/119+11786006..11786278hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17785.1.S1_x_at--373--4271Chr09:11761312..11761336 (25 bp)
CCTGGAGTGGTGGCCACTGGATCCA
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--968--6111Chr09:11761308..11761332 (25 bp)
GAGTGGTGGCCACTGGATCCAACCA
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--834--1091Chr09:11761307..11761331 (25 bp)
AGTGGTGGCCACTGGATCCAACCAG
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--126--8631Chr09:11761305..11761329 (25 bp)
TGGTGGCCACTGGATCCAACCAGAA
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--802--7531Chr09:11761303..11761327 (25 bp)
GTGGCCACTGGATCCAACCAGAACG
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--47--8451Chr09:11761301..11761325 (25 bp)
GGCCACTGGATCCAACCAGAACGAC
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--109--3331Chr09:11761299..11761322 (24 bp)
CACTGGATCCAACCAGAACGACGGG
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--916--511Chr09:11761016..11761040 (25 bp)
ATCGATGGTGGTATGTGGCTGAATC
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--970--9371Chr09:11761015..11761039 (25 bp)
TCGATGGTGGTATGTGGCTGAATCA
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--1115--4051Chr09:11761014..11761038 (25 bp)
CGATGGTGGTATGTGGCTGAATCAT
LOC_Os09g19660
OsAffx.17785.1.S1_x_at--422--8591Chr09:11761008..11761032 (25 bp)
TGGTATGTGGCTGAATCATGAAGGT
LOC_Os09g19660
Target Sequence 
CCTGGAGTGGTGGCCACTGGATCCAACCAGAACGACGGGGATGTTGTTGTTGGATGGATCGATGGTGGTATGTGGCTGAA
TCATGAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17785.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis