Browse Element(s) Details


OsAffx.17816.1.S1_x_at

Description tigr:9637.m01810
TID=OsAffx.17816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2108011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21030NANA9+12683680..12684069hypothetical protein
LOC_Os09g21040OsAffx.24701.1.S1_at5/119+12684745..12685682expressed protein
LOC_Os09g21040OsAffx.13010.1.S1_x_at4/119+12684745..12685682expressed protein
LOC_Os09g21050OsAffx.17814.1.S1_at11/119+12692578..12693000hypothetical protein
LOC_Os09g21060OsAffx.29954.1.S1_at11/119+12695927..12696302expressed protein
LOC_Os09g21060OsAffx.29954.1.S1_s_at11/119+12695927..12696302expressed protein
LOC_Os09g21070OsAffx.17815.1.S1_at11/119+12701497..12701886hypothetical protein
LOC_Os09g21080OsAffx.17816.1.S1_x_at11/119+12706784..12707074hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_x_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21100OsAffx.17818.1.S1_at11/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21100Os.15690.1.S1_at1/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21110Os.24539.1.S1_at10/119+12729778..12734641leucyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17816.1.S1_x_at--878--4371Chr09:12707020..12707044 (25 bp)
CCAAAGATGGCTGCCGTGATCTGCA
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--189--871Chr09:12707014..12707038 (25 bp)
ATGGCTGCCGTGATCTGCATGCTGG
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--387--4991Chr09:12706998..12707022 (25 bp)
GCATGCTGGCCCTAATCATGATGGG
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--645--8351Chr09:12706920..12706944 (25 bp)
GGCGGCTGCTCATGGAGCGCGAGCT
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--454--1031Chr09:12706890..12706914 (25 bp)
AGGTCACCAAGAAGCTGGCTGTCTC
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--347--7111Chr09:12706888..12706912 (25 bp)
GTCACCAAGAAGCTGGCTGTCTCGC
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--890--9491Chr09:12706869..12706893 (25 bp)
TCTCGCCGGCCGTCGGAGATGCCGC
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--26--9371Chr09:12706842..12706866 (25 bp)
TCGACAACTCCTATCACCCGATGGA
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--424--2191Chr09:12706839..12706863 (25 bp)
ACAACTCCTATCACCCGATGGACTG
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--430--391Chr09:12706830..12706854 (25 bp)
ATCACCCGATGGACTGCTCCCCTGG
LOC_Os09g21080
OsAffx.17816.1.S1_x_at--261--3811Chr09:12706814..12706838 (25 bp)
CTCCCCTGGCTGCTTTATTGATCCA
LOC_Os09g21080
Target Sequence 
CCAAAGATGGCTGCCGTGATCTGCATGCTGGCCCTAATCATGATGGGGCAGCAGCTGATGACGACGGCCGACGCCGCATC
GCCGGCGGAGCAGCACGGCCGGCGGCTGCTCATGGAGCGCGAGCTCGCCGAGGTCACCAAGAAGCTGGCTGTCTCGCCGG
CCGTCGGAGATGCCGCCGTCGACAACTCCTATCACCCGATGGACTGCTCCCCTGGCTGCTTTATTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17816.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis