Browse Element(s) Details


OsAffx.17820.1.S1_at

Description tigr:9637.m01817
TID=OsAffx.17820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2115011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21120OsAffx.29955.1.S1_at11/119+12745594..12747732U-box domain containing protein
LOC_Os09g21130NANA9+12753490..12754265hypothetical protein
LOC_Os09g21140OsAffx.17819.1.S1_at11/119+12757361..12757741hypothetical protein
LOC_Os09g21150OsAffx.17820.1.S1_at11/119+12760129..12762148hypothetical protein
LOC_Os09g21160OsAffx.29957.2.S1_s_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_x_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21160OsAffx.29957.1.S1_at11/119+12771638..12773119UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os09g21170OsAffx.29957.2.S1_s_at11/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21170OsAffx.29957.1.S1_x_at1/119+12776390..12777060homologous to glucosyltransferases, putative
LOC_Os09g21180OsAffx.29958.1.S1_at11/119+12779660..12782079Homeobox domain containing protein, expressed
LOC_Os09g21180OsAffx.29958.1.S1_x_at11/119+12779660..12782079Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17820.1.S1_at--68--8911Chr09:12760540..12760564 (25 bp)
TGAGAGCTCGTTTCCCATCGTTGAA
LOC_Os09g21150
OsAffx.17820.1.S1_at--36--6651Chr09:12760521..12760545 (25 bp)
GTTGAATCCAATCTCCAAAGCTCTG
LOC_Os09g21150
OsAffx.17820.1.S1_at--187--2351Chr09:12760505..12760529 (25 bp)
AAAGCTCTGGCGCTGAACTCTACGT
LOC_Os09g21150
OsAffx.17820.1.S1_at--1066--4571Chr09:12760496..12760520 (25 bp)
GCGCTGAACTCTACGTGGTGGATGA
LOC_Os09g21150
OsAffx.17820.1.S1_at--249--6191Chr09:12760473..12760497 (25 bp)
GAGGACAACTCTGTTTCTTCATTCG
LOC_Os09g21150
OsAffx.17820.1.S1_at--1068--6811Chr09:12760461..12760485 (25 bp)
GTTTCTTCATTCGTCGACCGGCGGA
LOC_Os09g21150
OsAffx.17820.1.S1_at--908--8111Chr09:12760439..12760463 (25 bp)
GGACTCCCGAGAGCATCCGTGAGAT
LOC_Os09g21150
OsAffx.17820.1.S1_at--1079--1891Chr09:12760320..12760344 (25 bp)
ACGTCGAGTGGCTCAGCATCAGCAA
LOC_Os09g21150
OsAffx.17820.1.S1_at--691--2451Chr09:12760297..12760321 (25 bp)
AACAAACAGCGCCTCGAGTGAAAGG
LOC_Os09g21150
OsAffx.17820.1.S1_at--89--4131Chr09:12760241..12760265 (25 bp)
CGCAGCCGATGCATTCACAATGGCA
LOC_Os09g21150
OsAffx.17820.1.S1_at--1129--3491Chr09:12760218..12760242 (25 bp)
CATGGATCTGCGGTGACTTCGCAAG
LOC_Os09g21150
Target Sequence 
TGAGAGCTCGTTTCCCATCGTTGAATCCAATCTCCAAAGCTCTGGCGCTGAACTCTACGTGGTGGATGAGGACAACTCTG
TTTCTTCATTCGTCGACCGGCGGACTCCCGAGAGCATCCGTGAGATCGATCTCCTTCCCGACGACGCTGTCGCCGACCTC
CGCACCATCGCGTCCCGCATGGCTGCAAGCCGGCTGTCGGCTCCTCCCTCTGTCGGCTCGACGTCGAGTGGCTCAGCATC
AGCAACAAACAGCGCCTCGAGTGAAAGGCCCTCGAGGCCAAGATATGCCGCTGGATCCGCGCAGCCGATGCATTCACAAT
GGCATGGATCTGCGGTGACTTCGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis