Browse Element(s) Details


OsAffx.17858.1.S1_at

Description tigr:9637.m02007
TID=OsAffx.17858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g234609/11hypothetical protein
LOC_Os11g291305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23420OsAffx.6373.1.S1_at11/119+13918743..13919868hypothetical protein
LOC_Os09g23430OsAffx.29987.1.S1_at11/119+13924466..13924666hypothetical protein
LOC_Os09g23440NANA9+13931139..13931372hypothetical protein
LOC_Os09g23450NANA9+13936074..13936307hypothetical protein
LOC_Os09g23460OsAffx.17858.1.S1_at9/119+13944037..13945492hypothetical protein
LOC_Os09g23470NANA9+13950086..13950492hypothetical protein
LOC_Os09g23480Os.47463.1.S1_x_at6/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23480Os.14491.2.S1_x_at4/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23490NANA9+13959299..13962604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23500OsAffx.17859.1.S1_at10/119+13963695..13965057hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17858.1.S1_at--1051--5051Chr09:13944248..13944272 (25 bp)
GCAGCAGCAAATCATGCCCGAGTAA
LOC_Os09g23460
OsAffx.17858.1.S1_at--622--411Chr09:13944258..13944282 (25 bp)
ATCATGCCCGAGTAACTGCACCAAT
LOC_Os09g23460
OsAffx.17858.1.S1_at--418--9811Chr09:13944270..13944294 (25 bp)
TAACTGCACCAATAACCCCAACAAT
LOC_Os09g23460
OsAffx.17858.1.S1_at--338--2451NONE
AACAATCCTTCCGACCGGATCGAGA
NONE
OsAffx.17858.1.S1_at--859--9291NONE
TCCGACCGGATCGAGATGTTTGCAC
NONE
OsAffx.17858.1.S1_at--305--8712Chr09:13945212..13945236 (25 bp)
TGTCCACTCCACTGGTCTGCAATAT
LOC_Os09g23460
OsAffx.17858.1.S1_at--267--1992Chr09:13945217..13945241 (25 bp)
ACTCCACTGGTCTGCAATATAGCTG
LOC_Os09g23460
OsAffx.17858.1.S1_at--149--3112Chr09:13945232..13945256 (25 bp)
AATATAGCTGCAGGTGTGCCACTAC
LOC_Os09g23460
OsAffx.17858.1.S1_at--292--1612Chr09:13945237..13945261 (25 bp)
AGCTGCAGGTGTGCCACTACCGGCG
LOC_Os09g23460
OsAffx.17858.1.S1_at--752--7951Chr09:13945287..13945311 (25 bp)
GGATCGAAGCCCTAGTGCTCCGTCG
LOC_Os09g23460
OsAffx.17858.1.S1_at--266--4432Chr09:13945362..13945386 (25 bp)
GCCATGGTCCAGTTCGTCCTATGGG
LOC_Os09g23460
Target Sequence 
GCAGCAGCAAATCATGCCCGAGTAACTGCACCAATAACCCCAACAATCCTTCCGACCGGATCGAGATGTTTGCACGGTCG
CCGGTGTCCACTCCACTGGTCTGCAATATAGCTGCAGGTGTGCCACTACCGGCGGGCTGCAACCTCCGCCAGCTTGCCCG
GATCGAAGCCCTAGTGCTCCGTCGTCCTCGTGCTCCTCGTCTTCCTCGTCTCTTCCAGGCGCTACAGCAGCAGCGCCATG
GTCCAGTTCGTCCTATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis