Browse Element(s) Details


OsAffx.17859.1.S1_at

Description tigr:9637.m02011
TID=OsAffx.17859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2350010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23460OsAffx.17858.1.S1_at9/119+13944037..13945492hypothetical protein
LOC_Os09g23470NANA9+13950086..13950492hypothetical protein
LOC_Os09g23480Os.47463.1.S1_x_at6/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23480Os.14491.2.S1_x_at4/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23490NANA9+13959299..13962604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23500OsAffx.17859.1.S1_at10/119+13963695..13965057hypothetical protein
LOC_Os09g23510OsAffx.17860.1.S1_at11/119+13977493..13977819hypothetical protein
LOC_Os09g23520OsAffx.29989.1.S1_at11/119+13981253..13981645hypothetical protein
LOC_Os09g23530Os.5983.1.S1_at11/119+13981974..13983583oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23540Os.6862.2.A1_at1/119+13985804..13987781mannitol dehydrogenase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17859.1.S1_at--269--6431Chr09:13963770..13964018 (25 bp)
GATCATCAGCCTTCCGCTGGAACCG
LOC_Os09g23500
OsAffx.17859.1.S1_at--561--4311Chr07:20621137..20621598 (25 bp)
CCTTCCGCTGGAACCGGCACCTATA
NONE
OsAffx.17859.1.S1_at--170--5191Chr09:13964978..13965002 (25 bp)
GAATTATAGGTGTTGGCGGTTTACG
LOC_Os09g23500
OsAffx.17859.1.S1_at--739--7391Chr09:13964987..13965011 (25 bp)
GTGTTGGCGGTTTACGAATCGGCAC
LOC_Os09g23500
OsAffx.17859.1.S1_at--626--4911Chr09:13964989..13965013 (25 bp)
GTTGGCGGTTTACGAATCGGCACCA
LOC_Os09g23500
OsAffx.17859.1.S1_at--754--8451Chr09:13964991..13965015 (25 bp)
TGGCGGTTTACGAATCGGCACCATT
LOC_Os09g23500
OsAffx.17859.1.S1_at--203--4431Chr09:13964993..13965017 (25 bp)
GCGGTTTACGAATCGGCACCATTGA
LOC_Os09g23500
OsAffx.17859.1.S1_at--949--10311Chr09:13964997..13965021 (25 bp)
TTTACGAATCGGCACCATTGATGTC
LOC_Os09g23500
OsAffx.17859.1.S1_at--394--1851Chr09:13965000..13965024 (25 bp)
ACGAATCGGCACCATTGATGTCACT
LOC_Os09g23500
OsAffx.17859.1.S1_at--496--5251Chr09:13965002..13965026 (25 bp)
GAATCGGCACCATTGATGTCACTAA
LOC_Os09g23500
OsAffx.17859.1.S1_at--872--3052Chr09:13965003..13965027 (25 bp)
AATCGGCACCATTGATGTCACTAAT
LOC_Os09g23500
Target Sequence 
GATCATCAGCCTTCCGCTGGAACCGGCACCTATAGAATTATAGGTGTTGGCGGTTTACGAATCGGCACCATTGATGTCAC
TAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis