Browse Element(s) Details


OsAffx.17860.1.S1_at

Description tigr:9637.m02013
TID=OsAffx.17860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2351011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23480Os.47463.1.S1_x_at6/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23480Os.14491.2.S1_x_at4/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23490NANA9+13959299..13962604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23500OsAffx.17859.1.S1_at10/119+13963695..13965057hypothetical protein
LOC_Os09g23510OsAffx.17860.1.S1_at11/119+13977493..13977819hypothetical protein
LOC_Os09g23520OsAffx.29989.1.S1_at11/119+13981253..13981645hypothetical protein
LOC_Os09g23530Os.5983.1.S1_at11/119+13981974..13983583oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23540Os.6862.2.A1_at1/119+13985804..13987781mannitol dehydrogenase, putative, expressed
LOC_Os09g23550Os.6862.2.A1_at11/119+13993600..13995754mannitol dehydrogenase, putative, expressed
LOC_Os09g23560Os.5983.1.S1_at3/119+14000191..14002138oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17860.1.S1_at--133--8471Chr09:13977536..13977560 (25 bp)
TGGCGCTGACCATCGGCCAGCTGAT
LOC_Os09g23510
OsAffx.17860.1.S1_at--360--5851Chr09:13977543..13977567 (25 bp)
GACCATCGGCCAGCTGATGGCTGAA
LOC_Os09g23510
OsAffx.17860.1.S1_at--925--8871Chr09:13977557..13977581 (25 bp)
TGATGGCTGAAGCATCGTCGTCGTC
LOC_Os09g23510
OsAffx.17860.1.S1_at--156--6211Chr09:13977655..13977679 (25 bp)
GAGGCCACCCTGCTGGCCGACGAAT
LOC_Os09g23510
OsAffx.17860.1.S1_at--638--9131Chr09:13977665..13977689 (25 bp)
TGCTGGCCGACGAATTAGCCACAAT
LOC_Os09g23510
OsAffx.17860.1.S1_at--371--151Chr09:13977678..13977702 (25 bp)
ATTAGCCACAATCGTTCAGGGCTGC
LOC_Os09g23510
OsAffx.17860.1.S1_at--314--511Chr09:13977688..13977712 (25 bp)
ATCGTTCAGGGCTGCCGTAGCATCT
LOC_Os09g23510
OsAffx.17860.1.S1_at--1130--1791Chr09:13977716..13977740 (25 bp)
ACCGCCATCCCAAGTCGTGGAGGTG
LOC_Os09g23510
OsAffx.17860.1.S1_at--782--4171Chr09:13977724..13977748 (25 bp)
CCCAAGTCGTGGAGGTGCAGATGCT
LOC_Os09g23510
OsAffx.17860.1.S1_at--958--1031Chr09:13977736..13977760 (25 bp)
AGGTGCAGATGCTGCCGTGAACGCC
LOC_Os09g23510
OsAffx.17860.1.S1_at--1117--3811Chr09:13977765..13977789 (25 bp)
CTGCCACCGTGTCCTTGACACTTGT
LOC_Os09g23510
Target Sequence 
TGGCGCTGACCATCGGCCAGCTGATGGCTGAAGCATCGTCGTCGTCGTCCCCACAGCCTCGTCGGCTGCTCGAGGTCGAC
GACGACGACGATGGAGAGGTCGTCGAGGCAGAGCTCGACGAGGCCACCCTGCTGGCCGACGAATTAGCCACAATCGTTCA
GGGCTGCCGTAGCATCTGCCACCGCCATCCCAAGTCGTGGAGGTGCAGATGCTGCCGTGAACGCCCCGGCTGCCACCGTG
TCCTTGACACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis