Browse Element(s) Details


OsAffx.29989.1.S1_at

Description tigr:9637.m02014
TID=OsAffx.29989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2352011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23480Os.47463.1.S1_x_at6/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23480Os.14491.2.S1_x_at4/119+13952727..13957796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23490NANA9+13959299..13962604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23500OsAffx.17859.1.S1_at10/119+13963695..13965057hypothetical protein
LOC_Os09g23510OsAffx.17860.1.S1_at11/119+13977493..13977819hypothetical protein
LOC_Os09g23520OsAffx.29989.1.S1_at11/119+13981253..13981645hypothetical protein
LOC_Os09g23530Os.5983.1.S1_at11/119+13981974..13983583oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23540Os.6862.2.A1_at1/119+13985804..13987781mannitol dehydrogenase, putative, expressed
LOC_Os09g23550Os.6862.2.A1_at11/119+13993600..13995754mannitol dehydrogenase, putative, expressed
LOC_Os09g23560Os.5983.1.S1_at3/119+14000191..14002138oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29989.1.S1_at--514--6911Chr09:13981367..13981391 (25 bp)
GTAGTTGATAGTGGGCATGAGGCCG
LOC_Os09g23520
OsAffx.29989.1.S1_at--331--691Chr09:13981395..13981419 (25 bp)
ATGACGAAGCGGGTCTCGCCGGAGC
LOC_Os09g23520
OsAffx.29989.1.S1_at--295--4071Chr09:13981484..13981508 (25 bp)
CGAGGAGGCACTGGCCATGTAGACA
LOC_Os09g23520
OsAffx.29989.1.S1_at--76--6211Chr09:13981488..13981512 (25 bp)
GAGGCACTGGCCATGTAGACAAAGT
LOC_Os09g23520
OsAffx.29989.1.S1_at--1071--5091Chr09:13981491..13981515 (25 bp)
GCACTGGCCATGTAGACAAAGTAGT
LOC_Os09g23520
OsAffx.29989.1.S1_at--780--2812Chr09:13981509..13981533 (25 bp)
AAGTAGTCGTAGGATTCGATGCCCC
LOC_Os09g23520
OsAffx.29989.1.S1_at--59--10073Chr09:13981512..13981536 (25 bp)
TAGTCGTAGGATTCGATGCCCCGGT
LOC_Os09g23520
OsAffx.29989.1.S1_at--33--9373Chr09:13981515..13981539 (25 bp)
TCGTAGGATTCGATGCCCCGGTGGA
LOC_Os09g23520
OsAffx.29989.1.S1_at--837--591Chr09:13981527..13981551 (25 bp)
ATGCCCCGGTGGAGCTCATCGTTGG
LOC_Os09g23520
OsAffx.29989.1.S1_at--9--1091Chr09:13981569..13981593 (25 bp)
AGGGCTACATCGTCGTGCGTGCTGA
LOC_Os09g23520
OsAffx.29989.1.S1_at--524--513Chr09:13981577..13981601 (25 bp)
ATCGTCGTGCGTGCTGATGACTCGG
LOC_Os09g23520
Target Sequence 
GTAGTTGATAGTGGGCATGAGGCCGGCGATGACGAAGCGGGTCTCGCCGGAGCAGCGGACGATGGCGACCTCCTCGTTGC
GGAAGGGGGAGACGCGCGGGTTCGGCAGCCGCCGGAGCGAGGAGGCACTGGCCATGTAGACAAAGTAGTCGTAGGATTCG
ATGCCCCGGTGGAGCTCATCGTTGGGGTGCAGGACGCGGAGGAGGGCTACATCGTCGTGCGTGCTGATGACTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis