Browse Element(s) Details


Os.6862.2.A1_at

Description gb:AK067085.1
DB_XREF= gi:32977103
TID=Os.6862.2
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096I15, full insert sequence.
FL= gb:AK067085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2355011/11mannitol dehydrogenase, putative, expressed
LOC_Os02g302001/11expressed protein
LOC_Os09g235401/11mannitol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23510OsAffx.17860.1.S1_at11/119+13977493..13977819hypothetical protein
LOC_Os09g23520OsAffx.29989.1.S1_at11/119+13981253..13981645hypothetical protein
LOC_Os09g23530Os.5983.1.S1_at11/119+13981974..13983583oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23540Os.6862.2.A1_at1/119+13985804..13987781mannitol dehydrogenase, putative, expressed
LOC_Os09g23550Os.6862.2.A1_at11/119+13993600..13995754mannitol dehydrogenase, putative, expressed
LOC_Os09g23560Os.5983.1.S1_at3/119+14000191..14002138oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g23570NANA9+14006973..14008919Leucine Rich Repeat family protein, expressed
LOC_Os09g23580OsAffx.20695.1.S1_x_at1/119+14012383..14012973hypothetical protein
LOC_Os09g23590Os.6861.1.S1_at11/119+14019194..14019798expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6862.2.A1_at--551--5811Chr09:13995350..13995374 (25 bp)
GACGCCAAGATATAAAGCTCGCCGG
LOC_Os09g23550
Os.6862.2.A1_at--804--1251Chr09:13995357..13995381 (25 bp)
AGATATAAAGCTCGCCGGCTTGCTT
LOC_Os09g23550
Os.6862.2.A1_at--441--5931Chr09:13995492..13995516 (25 bp)
GAGCATATGTCTCCATCACTTGGTT
LOC_Os09g23550
Os.6862.2.A1_at--1006--7151Chr09:13995500..13995524 (25 bp)
GTCTCCATCACTTGGTTATTAATTA
LOC_Os09g23550
Os.6862.2.A1_at--1093--6492Chr09:13995560..13995584 (25 bp)
GATAGGCCACATTGTTTAAGTCTAA
LOC_Os09g23550
Os.6862.2.A1_at--90--10491Chr09:13995575..13995599 (25 bp)
TTAAGTCTAAGGTCTATTTGGGAAT
LOC_Os09g23550
Os.6862.2.A1_at--131--5211Chr09:13995596..13995620 (25 bp)
GAATTGGGATAGCTTGAGATTCTGA
LOC_Os09g23550
Os.6862.2.A1_at--85--5071Chr09:13995624..13995648 (25 bp)
GCAGCTATTTGGTAGCTAGCTTATC
LOC_Os09g23550
Os.6862.2.A1_at--308--10252Chr09:13995631..13995655 (25 bp)
TTTGGTAGCTAGCTTATCAGAATCT
LOC_Os09g23550
Os.6862.2.A1_at--683--2356Chr10:1835981..1836004 (24 bp)
AAAGCTAGGTTTCCCAGCTTCTGGT
NONE
Os.6862.2.A1_at--1080--7852Chr09:13995666..13995690 (25 bp)
GGTTTCCCAGCTTCTGGTTTATAGT
LOC_Os09g23550
Target Sequence 
GACGCCAAGATATAAAGCTCGCCGGCTTGCTTGCTTGCTTGTGTCGACGGCGCCGGCGCCGCCTAGCTTGCTTGTTGTGT
GTCAGTGGCCTTGAATGTTTGGTGATGTGCAAACTACTACGAAATGGAGTAAGAAATAAGTGGAGCATATGTCTCCATCA
CTTGGTTATTAATTAGTCGAGCTAATTAATTGTACATATTGAGAAATGATGATAGGCCACATTGTTTAAGTCTAAGGTCT
ATTTGGGAATTGGGATAGCTTGAGATTCTGAGAAGCAGCTATTTGGTAGCTAGCTTATCAGAATCTGGAAAAGCTAGGTT
TCCCAGCTTCTGGTTTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6862.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis