Browse Element(s) Details


OsAffx.17955.1.S1_at

Description tigr:9637.m02543
TID=OsAffx.17955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2886011/11Late embryogenesis abundant protein D-34, putative
LOC_Os02g456301/11hypothetical protein
LOC_Os12g285201/11abscisic acid-inducible, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28840OsAffx.30068.1.S1_at11/119+17512624..17517474Serine carboxypeptidase family protein, expressed
LOC_Os09g28850Os.49127.1.S1_at11/119+17533413..17536817expressed protein
LOC_Os09g28860OsAffx.17955.1.S1_at11/119+17541290..17542005Late embryogenesis abundant protein D-34, putative
LOC_Os09g28869NANA9+17543887..17544416NA
LOC_Os09g28880Os.50419.1.S2_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28880Os.50419.1.S1_x_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28890Os.49181.1.S1_at11/119+17555973..17557590transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g28900NANA9+17564470..17565196Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g28910Os.19131.1.A1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28910OsAffx.30069.1.S1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17955.1.S1_at--1085--8611Chr09:17541381..17541405 (25 bp)
TGGGCGTCATCGGTCATGACCAGTC
LOC_Os09g28860
OsAffx.17955.1.S1_at--571--9611Chr09:17541387..17541411 (25 bp)
TCATCGGTCATGACCAGTCCACGGA
LOC_Os09g28860
OsAffx.17955.1.S1_at--330--7811Chr09:17541392..17541416 (25 bp)
GGTCATGACCAGTCCACGGACGCCA
LOC_Os09g28860
OsAffx.17955.1.S1_at--949--1791Chr09:17541416..17541440 (25 bp)
ACCGCTGAGCATGGCGTCAACATCT
LOC_Os09g28860
OsAffx.17955.1.S1_at--676--4972Chr09:17541468..17541492 (25 bp)
GCATCGTCACTGAGTTCGTCCCGGC
LOC_Os09g28860
OsAffx.17955.1.S1_at--666--6711Chr09:17541481..17541912 (25 bp)
GTTCGTCCCGGCCAGTGACACGTCA
LOC_Os09g28860
OsAffx.17955.1.S1_at--37--3471Chr09:17541900..17541924 (25 bp)
CAGTGACACGTCACCGCCATGTAGG
LOC_Os09g28860
OsAffx.17955.1.S1_at--640--731Chr09:17541918..17541942 (25 bp)
ATGTAGGACGCAAACCGGCCACGTA
LOC_Os09g28860
OsAffx.17955.1.S1_at--631--2371Chr09:17541929..17541953 (25 bp)
AAACCGGCCACGTAGATGCCACATC
LOC_Os09g28860
OsAffx.17955.1.S1_at--339--3353Chr11:2218189..2218213 (25 bp)
CACGTAGATGCCACATCGGCCAAAA
NONE
OsAffx.17955.1.S1_at--1069--10034Chr09:17541941..17541965 (25 bp)
TAGATGCCACATCGGCCAAAACCAC
LOC_Os09g28860
Target Sequence 
TGGGCGTCATCGGTCATGACCAGTCCACGGACGCCACCGCTGAGCATGGCGTCAACATCTCCGATACCCTCGTCCCCGGC
GGCGGCCGCATCGTCACTGAGTTCGTCCCGGCCAGTGACACGTCACCGCCATGTAGGACGCAAACCGGCCACGTAGATGC
CACATCGGCCAAAACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis