Browse Element(s) Details


OsAffx.17964.2.S1_at

Description tigr:9637.m02637
TID=OsAffx.17964.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2968011/11hypothetical protein
LOC_Os05g351601/11ANTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29660Os.39617.1.S1_at11/119+18033120..18038232ABC-2 type transporter family protein, expressed
LOC_Os09g29670Os.39617.1.S1_at2/119+18043670..18049945ABC-2 type transporter family protein
LOC_Os09g29680OsAffx.17964.2.S1_x_at11/119+18053594..18054286hypothetical protein
LOC_Os09g29680OsAffx.17964.2.S1_at11/119+18053594..18054286hypothetical protein
LOC_Os09g29690Os.7530.1.S1_at1/119+18057252..18057979Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29700NANA9+18058643..18063517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g29710Os.7530.1.S1_at11/119+18066435..18067412Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29720OsAffx.10637.3.S1_s_at11/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.1.S1_s_at10/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.4.S1_s_at8/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17964.2.S1_at--1147--5071Chr09:18054137..18054161 (25 bp)
GCACCAGGGACGACCGCTCCGCGAG
LOC_Os09g29680
OsAffx.17964.2.S1_at--553--10552Chr05:20795353..20795376 (24 bp)
TTCATCATGAGAGACGACGAGGCCA
LOC_Os05g35160
OsAffx.17964.2.S1_at--286--8891Chr09:18054063..18054087 (25 bp)
TGAGAGACGACGAGGCCACGAACGC
LOC_Os09g29680
OsAffx.17964.2.S1_at--104--4231Chr09:18054033..18054057 (25 bp)
CCGACAAGGCGATGGCGCTCGTAGC
LOC_Os09g29680
OsAffx.17964.2.S1_at--490--3791Chr09:18054016..18054040 (25 bp)
CTCGTAGCGAGGGAGACGCCGACGA
LOC_Os09g29680
OsAffx.17964.2.S1_at--434--1511Chr09:18053976..18054000 (25 bp)
AGCAGCTCCTCGCGAAGGCACAACT
LOC_Os09g29680
OsAffx.17964.2.S1_at--471--4271Chr09:18053807..18053830 (24 bp)
CCTGGCGCCGCATTGTCTTTTGCTG
LOC_Os09g29680
OsAffx.17964.2.S1_at--637--8531Chr09:18053723..18053747 (25 bp)
TGGAGGAGCACTTGTAGAAGCCGGA
LOC_Os09g29680
OsAffx.17964.2.S1_at--958--3951Chr09:18053693..18053717 (25 bp)
CGGAGGACATCAGGCTTCTCGAGGA
LOC_Os09g29680
OsAffx.17964.2.S1_at--542--9511Chr09:18053677..18053701 (25 bp)
TCTCGAGGAGAAGGCATCCGTGCCG
LOC_Os09g29680
OsAffx.17964.2.S1_at--895--7672Chr05:7336638..7336660 (23 bp)
GGGTTGGACGACAGCTTCGGCTTCT
NONE
Target Sequence 
GCACCAGGGACGACCGCTCCGCGAGCAGCTGTACGCGTCCCCCGGGAACCGCTTCAACTACGACGACTTCATCATGAGAG
ACGACGAGGCCACGAACGCCGAGGCCGACAAGGCGATGGCGCTCGTAGCGAGGGAGACGCCGACGAGCGAGATGACGCTG
GAGCAGCTCCTCGCGAAGGCACAACTCCTCCTGGCGCCGCATTGTCTTTTGCTGCCAGTGGCGATGGTGGTGGTGGTTCT
TGCTCTTGAGAAGAAGCTGCTGGTGGTGGTGCTTGGAGGAGCACTTGTAGAAGCCGGAGGGGTCGGAGGACATCAGGCTT
CTCGAGGAGAAGGCATCCGTGCCGTCGTCGTCGGAGATGGTGAAGCCATAGGGGTTGGACGACAGCTTCGGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17964.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis