Browse Element(s) Details


Os.39617.1.S1_at

Description gb:AK120390.1
DB_XREF= gi:37990013
TID=Os.39617.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073P15, full insert sequence.
FL= gb:AK120390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2966011/11ABC-2 type transporter family protein, expressed
LOC_Os09g296702/11ABC-2 type transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed
LOC_Os09g29640OsAffx.30083.1.S1_at11/119+18021108..18021347hypothetical protein
LOC_Os09g29650OsAffx.17963.1.S1_at11/119+18022855..18026263hypothetical protein
LOC_Os09g29660Os.39617.1.S1_at11/119+18033120..18038232ABC-2 type transporter family protein, expressed
LOC_Os09g29670Os.39617.1.S1_at2/119+18043670..18049945ABC-2 type transporter family protein
LOC_Os09g29680OsAffx.17964.2.S1_x_at11/119+18053594..18054286hypothetical protein
LOC_Os09g29680OsAffx.17964.2.S1_at11/119+18053594..18054286hypothetical protein
LOC_Os09g29690Os.7530.1.S1_at1/119+18057252..18057979Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29700NANA9+18058643..18063517retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39617.1.S1_at--32--4091Chr09:18037671..18037695 (25 bp)
CGACCTGCCCAAGCCGGTGTGGAAG
LOC_Os09g29660
Os.39617.1.S1_at--181--7732Chr09:18037686..18037710 (25 bp)
GGTGTGGAAGTACCCCATGTACTAC
LOC_Os09g29660
Os.39617.1.S1_at--795--3512Chr09:18049615..18049639 (25 bp)
CATGTACTACATCGCGTTCCACAAG
LOC_Os09g29670
Os.39617.1.S1_at--730--1871Chr09:18037814..18037838 (25 bp)
ACGAGATCCTGCGAGACTACTGGCA
LOC_Os09g29660
Os.39617.1.S1_at--707--7831Chr09:18037850..18037874 (25 bp)
GGTACAGCAAGTGGGTCGACCTCGC
LOC_Os09g29660
Os.39617.1.S1_at--747--7492Chr09:18049811..18049835 (25 bp)
GTGGTGCTGTACAGGGTGCTCTTCT
LOC_Os09g29670
Os.39617.1.S1_at--612--3751Chr09:18037963..18037987 (25 bp)
CTCAGGTTCAGGAGCGACGCGCCGT
LOC_Os09g29660
Os.39617.1.S1_at--31--4511Chr09:18037983..18038007 (25 bp)
GCCGTCGGTGCACATCGCCGAGAAT
LOC_Os09g29660
Os.39617.1.S1_at--126--5431Chr09:18038018..18038042 (25 bp)
GAAGCCTTTGATCCAACATCGATTG
LOC_Os09g29660
Os.39617.1.S1_at--241--7511Chr09:18038048..18038072 (25 bp)
GTGGTTTTTACCCATAGGCATCTGA
LOC_Os09g29660
Os.39617.1.S1_at--524--7011Chr09:18038167..18038191 (25 bp)
GTACTACTCGAGAGTCTACCCAATA
LOC_Os09g29660
Target Sequence 
CGACCTGCCCAAGCCGGTGTGGAAGTACCCCATGTACTACATCGCGTTCCACAAGTACGCCAACCAGGGGTTCTACAAGA
ACGAGTTCTTGGGGCTCACCTTCCCCAACAACCAGGCCGGCGGCGCCGCCACCATCACCGGCCACGAGATCCTGCGAGAC
TACTGGCAGGTGCAGCTGGGGTACAGCAAGTGGGTCGACCTCGCCATCCTCGGTGGGATGGTGGTGCTGTACAGGGTGCT
CTTCTTCGTCATCGTCAAGCTCATCGAGAAGATGAAGCCCATGGTGCAGAGGCTCAGGTTCAGGAGCGACGCGCCGTCGG
TGCACATCGCCGAGAATNGCTCGGCAGGAAGCCTTTGATCCAACATCGATTGGGGCAGTGGTTTTTACCCATAGGCATCT
GATATATTAGTGGTGTGATATATGTGAACATTGTATATGCAAGGGTGAGATGATGTCAGTTTTTTTGTTTGAGAAAAGAA
ANGGAAAAATGTTTTTGTACTACTCGAGAGTCTACCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis