Browse Element(s) Details


OsAffx.30083.1.S1_at

Description tigr:9637.m02633
TID=OsAffx.30083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2964011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29600Os.53208.1.S1_at11/119+18001519..18007035Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed
LOC_Os09g29640OsAffx.30083.1.S1_at11/119+18021108..18021347hypothetical protein
LOC_Os09g29650OsAffx.17963.1.S1_at11/119+18022855..18026263hypothetical protein
LOC_Os09g29660Os.39617.1.S1_at11/119+18033120..18038232ABC-2 type transporter family protein, expressed
LOC_Os09g29670Os.39617.1.S1_at2/119+18043670..18049945ABC-2 type transporter family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30083.1.S1_at--871--2191Chr09:18021147..18021171 (25 bp)
ACAAAAGCAATGTTGACAGGATCAT
LOC_Os09g29640
OsAffx.30083.1.S1_at--738--5651Chr09:18021161..18021185 (25 bp)
GACAGGATCATGTCATCACGATCAC
LOC_Os09g29640
OsAffx.30083.1.S1_at--938--371Chr09:18021175..18021199 (25 bp)
ATCACGATCACAGCTCGGTAATTGC
LOC_Os09g29640
OsAffx.30083.1.S1_at--448--6451Chr09:18021180..18021204 (25 bp)
GATCACAGCTCGGTAATTGCGGTCA
LOC_Os09g29640
OsAffx.30083.1.S1_at--412--3311Chr09:18021183..18021207 (25 bp)
CACAGCTCGGTAATTGCGGTCACAA
LOC_Os09g29640
OsAffx.30083.1.S1_at--1123--1571Chr09:18021186..18021210 (25 bp)
AGCTCGGTAATTGCGGTCACAATTT
LOC_Os09g29640
OsAffx.30083.1.S1_at--1024--4611Chr09:18021198..18021222 (25 bp)
GCGGTCACAATTTTTACAACGTTAG
LOC_Os09g29640
OsAffx.30083.1.S1_at--1151--1871Chr09:18021216..18021240 (25 bp)
ACGTTAGTAATTACGGCATGCATAC
LOC_Os09g29640
OsAffx.30083.1.S1_at--1095--1931Chr09:18021228..18021252 (25 bp)
ACGGCATGCATACTCGTCAAGGCTG
LOC_Os09g29640
OsAffx.30083.1.S1_at--756--631Chr09:18021233..18021257 (25 bp)
ATGCATACTCGTCAAGGCTGCCTTC
LOC_Os09g29640
OsAffx.30083.1.S1_at--996--9651Chr09:18021271..18021295 (25 bp)
TCAGACACAGTCGATCCCAACAACA
LOC_Os09g29640
Target Sequence 
ACAAAAGCAATGTTGACAGGATCATGTCATCACGATCACAGCTCGGTAATTGCGGTCACAATTTTTACAACGTTAGTAAT
TACGGCATGCATACTCGTCAAGGCTGCCTTCCTTTCCCCTGACCTCAGACACAGTCGATCCCAACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis