Browse Element(s) Details


OsAffx.30082.1.S1_at

Description tigr:9637.m02631
TID=OsAffx.30082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2962011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29584Os.49892.1.S1_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_s_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_at8/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.53217.1.S1_x_at3/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.9332.2.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.7337.1.S1_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.43567.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.1353.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.38172.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29600Os.53208.1.S1_at11/119+18001519..18007035Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed
LOC_Os09g29640OsAffx.30083.1.S1_at11/119+18021108..18021347hypothetical protein
LOC_Os09g29650OsAffx.17963.1.S1_at11/119+18022855..18026263hypothetical protein
LOC_Os09g29660Os.39617.1.S1_at11/119+18033120..18038232ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30082.1.S1_at--416--10671Chr09:18011453..18011477 (25 bp)
TTCCTTCTTCTCTACTGGAGAGTCA
LOC_Os09g29620
OsAffx.30082.1.S1_at--298--2371Chr09:18011377..18011401 (25 bp)
AAACCTCTGGCGTGCAGTCCAAGAT
LOC_Os09g29620
OsAffx.30082.1.S1_at--1034--1131Chr09:18011362..18011386 (25 bp)
AGTCCAAGATTGTTTGCCCACTGGC
LOC_Os09g29620
OsAffx.30082.1.S1_at--267--10691Chr09:18011337..18011361 (25 bp)
TTCCAGCTGAGAAGGCGTCACATTG
LOC_Os09g29620
OsAffx.30082.1.S1_at--318--8931Chr09:18011305..18011329 (25 bp)
TGACGGCTACGTTTTCTGTAATAGG
LOC_Os09g29620
OsAffx.30082.1.S1_at--371--8171Chr09:18011269..18011293 (25 bp)
GGAACATGTCTTTCTTTCATGCCCC
LOC_Os09g29620
OsAffx.30082.1.S1_at--1084--3671Chr09:18011245..18011269 (25 bp)
CTTTGCTAGCTCTGTTTGGCAGGAA
LOC_Os09g29620
OsAffx.30082.1.S1_at--987--2691Chr09:18011134..18011158 (25 bp)
AAGCTTTCAACACACTGTCCTTATA
LOC_Os09g29620
OsAffx.30082.1.S1_at--817--5571Chr09:18011069..18011093 (25 bp)
GAAATGGGATTAGCGCCCTGCATCC
LOC_Os09g29620
OsAffx.30082.1.S1_at--1080--8831Chr09:18010933..18010957 (25 bp)
TGATCAATACCGATGCTGCAGTTTT
LOC_Os09g29620
OsAffx.30082.1.S1_at--599--5011Chr09:18010916..18010940 (25 bp)
GCAGTTTTCCAATCTACTCGTCAAG
LOC_Os09g29620
Target Sequence 
TTCCTTCTTCTCTACTGGAGAGTCAGAAAAGCTGGAAAGCTCTGTGGAAGATCAATGCACCTGGGAAGATGAAGATAAAC
CTCTGGCGTGCAGTCCAAGATTGTTTGCCCACTGGCTTCCAGCTGAGAAGGCGTCACATTGATTCTAATGACGGCTACGT
TTTCTGTAATAGGGATGATACGTTGGAACATGTCTTTCTTTCATGCCCCTTTGCTAGCTCTGTTTGGCAGGAAATTAAAC
AGATATATGATATCAAATTGAAGAGAAGGGGGATCATGCACTTGAGAAATTGGATTTTTGACTTCCTGGAACAGAATTCA
AGCTTTCAACACACTGTCCTTATAGTAACTTTTTGGCATATCAGGGAAGCAAGGAACAATGCAAGAAATGGGATTAGCGC
CCTGCATCCTCGGCGCGTGGCTCAGAAGGTGTTTGGTTATGTCGATATGATAATGCAACATTGCTCCAAATCTCCCCTCC
TCCATTCCAAGGTGGATTCCACCGCCGGAAGGAACAGTAATGATCAATACCGATGCTGCAGTTTTCCAATCTACTCGTCA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis