Browse Element(s) Details

OsAffx.6442.1.S1_at

Description

tigr:9637.m02628
TID=OsAffx.6442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g29584	8/11	wall-associated kinase 3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g29520	Os.51022.1.A1_at	11/11	9	+	17960168..17961784	wall-associated kinase 3, putative, expressed
LOC_Os09g29530	NA	NA	9	+	17965322..17965573	hypothetical protein
LOC_Os09g29540	Os.39294.1.S1_at	11/11	9	+	17967401..17970303	Protein kinase domain containing protein, expressed
LOC_Os09g29550	Os.4183.1.S1_a_at	1/11	9	+	17973076..17973300	hypothetical protein
LOC_Os09g29560	Os.39294.1.S1_at	2/11	9	+	17975722..17978389	Calcium binding EGF domain containing protein
LOC_Os09g29570	NA	NA	9	+	17980772..17983335	hypothetical protein
LOC_Os09g29584	Os.49892.1.S1_at	11/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	OsAffx.6442.1.S1_s_at	11/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	OsAffx.6442.1.S1_at	8/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	Os.53217.1.S1_x_at	3/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	Os.9332.2.S1_x_at	1/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	OsAffx.7337.1.S1_at	1/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	Os.43567.1.S1_x_at	1/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	OsAffx.1353.1.S1_x_at	1/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29584	Os.38172.1.S1_x_at	1/11	9	+	17986176..17995612	wall-associated kinase 3, putative, expressed
LOC_Os09g29600	Os.53208.1.S1_at	11/11	9	+	18001519..18007035	Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610	OsAffx.30081.1.S1_at	11/11	9	+	18009393..18010082	hypothetical protein
LOC_Os09g29620	OsAffx.30082.1.S1_at	11/11	9	+	18010849..18011694	hypothetical protein
LOC_Os09g29630	Os.5681.1.S1_at	11/11	9	+	18012220..18019624	NOL1/NOP2/sun family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007166	biological_process	cell surface receptor linked signal transduction
GO:0009826	biological_process	unidimensional cell growth
GO:0048527	biological_process	lateral root development
GO:0005618	cellular_component	cell wall
GO:0005886	cellular_component	plasma membrane
GO:0009505	cellular_component	cell wall (sensu Magnoliophyta)
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.6442.1.S1_at--437--855	1	NONE	TGGAGAGCAACGCTCTAACTGCGCA	NONE
OsAffx.6442.1.S1_at--45--137	1	NONE	AGAGCAACGCTCTAACTGCGCACTG	NONE
OsAffx.6442.1.S1_at--87--261	1	NONE	AACGCTCTAACTGCGCACTGTGCTA	NONE
OsAffx.6442.1.S1_at--167--377	1	Chr09:17994050..17994072 (23 bp)	CTCTAACTGCGCACTGTGCTATTGA	LOC_Os09g29584
OsAffx.6442.1.S1_at--590--113	1	Chr09:17994022..17994046 (25 bp)	AGTGCCCGTCAGCTTCCAAATTAAT	LOC_Os09g29584
OsAffx.6442.1.S1_at--17--455	1	Chr09:17994019..17994043 (25 bp)	GCCCGTCAGCTTCCAAATTAATGAT	LOC_Os09g29584
OsAffx.6442.1.S1_at--680--401	1	Chr09:17994018..17994040 (23 bp)	CGTCAGCTTCCAAATTAATGATGAA	LOC_Os09g29584
OsAffx.6442.1.S1_at--509--977	1	Chr09:17993936..17994025 (25 bp)	TAATGATGAAGTCACTGACCAAGGC	LOC_Os09g29584
OsAffx.6442.1.S1_at--444--295	1	Chr09:17993916..17993940 (25 bp)	AAGGCCCTCCAAATATTTCCATGAA	LOC_Os09g29584
OsAffx.6442.1.S1_at--474--841	1	Chr09:17993914..17993938 (25 bp)	GGCCCTCCAAATATTTCCATGAAGA	LOC_Os09g29584
OsAffx.6442.1.S1_at--740--389	1	Chr09:17993880..17993904 (25 bp)	CTGGCAAATCAACAAGAACATCTTT	LOC_Os09g29584

Target Sequence

TGGAGAGCAACGCTCTAACTGCGCACTGTGCTATTGATCCAGTGCCCGTCAGCTTCCAAATTAATGATGAAGTCACTGAC
CAAGGCCCTCCAAATATTTCCATGAAGAAAAGAAAAACTGGCAAATCAACAAGAACATCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis