Browse Element(s) Details


Os.53208.1.S1_at

Description gb:AK071360.1
DB_XREF= gi:32981383
TID=Os.53208.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090B05, full insert sequence.
FL= gb:AK071360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2960011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29560Os.39294.1.S1_at2/119+17975722..17978389Calcium binding EGF domain containing protein
LOC_Os09g29570NANA9+17980772..17983335hypothetical protein
LOC_Os09g29584Os.49892.1.S1_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_s_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_at8/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.53217.1.S1_x_at3/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.9332.2.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.7337.1.S1_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.43567.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.1353.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.38172.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29600Os.53208.1.S1_at11/119+18001519..18007035Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed
LOC_Os09g29640OsAffx.30083.1.S1_at11/119+18021108..18021347hypothetical protein
LOC_Os09g29650OsAffx.17963.1.S1_at11/119+18022855..18026263hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53208.1.S1_at--332--8051Chr09:18002079..18002103 (25 bp)
GGAGTTGTTCTCGTAGAGCTTCTCA
LOC_Os09g29600
Os.53208.1.S1_at--1138--5911Chr09:18002064..18002088 (25 bp)
GAGCTTCTCACATGCCAGAAAGCGT
LOC_Os09g29600
Os.53208.1.S1_at--875--2351Chr09:18002046..18002070 (25 bp)
AAAGCGTTCAACCTCAATGCACCTG
LOC_Os09g29600
Os.53208.1.S1_at--146--5231Chr09:18001930..18001954 (25 bp)
GAATATGCCATTTCTCGAAGAGATT
LOC_Os09g29600
Os.53208.1.S1_at--273--1251Chr09:18001901..18001925 (25 bp)
AGTTGGCAGCACAATGCTTGGAGAT
LOC_Os09g29600
Os.53208.1.S1_at--219--6271Chr09:18001879..18001903 (25 bp)
GATGTCTGGTGTGAATAGGCCATCA
LOC_Os09g29600
Os.53208.1.S1_at--1073--2011Chr09:18001807..18001831 (25 bp)
ACATCCATGGGCAGAACAGAATTCA
LOC_Os09g29600
Os.53208.1.S1_at--829--6851Chr09:18001769..18001793 (25 bp)
GTTTGCTTGGAGAATCGTCCATGGT
LOC_Os09g29600
Os.53208.1.S1_at--197--7831Chr09:18001747..18001771 (25 bp)
GGTCAGCTCAAGGTATACCAGTACA
LOC_Os09g29600
Os.53208.1.S1_at--795--2311Chr09:18001701..18001725 (25 bp)
AAAGGTGTCATGGAGCTAGATTCAG
LOC_Os09g29600
Os.53208.1.S1_at--696--3291Chr09:18001530..18001554 (25 bp)
CAAAGTAATGTTGGCGGCTGCTCAA
LOC_Os09g29600
Target Sequence 
GGAGTTGTTCTCGTAGAGCTTCTCACATGCCAGAAAGCGTTCAACCTCAATGCACCTGAACATGAGAAAAGCCTATCGAT
GAGGTTTCTCAATGCAATGAAGAATAACAAGCTTGCAGATATATTAGATGACCAGATCAAGAATAGTGAGAATATGCCAT
TTCTCGAAGAGATTGCAGAGTTGGCAGCACAATGCTTGGAGATGTCTGGTGTGAATAGGCCATCAATGAAGCACATTGCA
GATAATCTTGACAGGCTGAGAAAGGTTATGCAACATCCATGGGCAGAACAGAATTCAGAAGAGTTGGAGAGTTTGCTTGG
AGAATCGTCCATGGTCAGCTCAAGGTATACCAGTACAGGAAATTTCAGCATAGAGAGAAAAGGTGTCATGGAGCTAGATT
CAGGGAGGTAGTAGCTATACTTTTTTTTTCAAAATCTTGGTGGGCAATGTCAGTATTATCTACTTAAAATAATCATATCA
CAGATCTTATTACAGTAAATATGCAATATCATATTGTTGGCAAAATTACTTGCATTGTATGTAGGACAACAAAGTAATGT
TGGCGGCTGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis