Browse Element(s) Details


OsAffx.6442.1.S1_s_at

Description tigr:9637.m02628
TID=OsAffx.6442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2958411/11wall-associated kinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29520Os.51022.1.A1_at11/119+17960168..17961784wall-associated kinase 3, putative, expressed
LOC_Os09g29530NANA9+17965322..17965573hypothetical protein
LOC_Os09g29540Os.39294.1.S1_at11/119+17967401..17970303Protein kinase domain containing protein, expressed
LOC_Os09g29550Os.4183.1.S1_a_at1/119+17973076..17973300hypothetical protein
LOC_Os09g29560Os.39294.1.S1_at2/119+17975722..17978389Calcium binding EGF domain containing protein
LOC_Os09g29570NANA9+17980772..17983335hypothetical protein
LOC_Os09g29584Os.49892.1.S1_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_s_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_at8/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.53217.1.S1_x_at3/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.9332.2.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.7337.1.S1_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.43567.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.1353.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.38172.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29600Os.53208.1.S1_at11/119+18001519..18007035Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6442.1.S1_s_at--586--4411Chr09:17995539..17995563 (25 bp)
GCCAGCCTTTTTTGTGTCTGTCTGT
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--697--491Chr09:17995413..17995437 (25 bp)
ATCGGCAAGCACTGCGCGATGCAGA
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--924--5331Chr09:17995387..17995411 (25 bp)
GAAGTATCCGTTTGATCTCGACTGC
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--113--6411Chr09:17995374..17995398 (25 bp)
GATCTCGACTGCTTGGACGTGAATG
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--728--8491Chr09:17995351..17995375 (25 bp)
TGGCACCAAGAAGCCTTTCTACAAC
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--420--1851Chr09:17995322..17995346 (25 bp)
ACGAGGTTACCAAGATTTCGGTGCA
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--641--6791Chr09:17995256..17995280 (25 bp)
GTTATGACCACGTGACAGGCCATAT
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--1030--8431Chr09:17995239..17995263 (25 bp)
GGCCATATCCTGTACGACAGCAACG
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--876--2571Chr09:17995218..17995242 (25 bp)
AACGCAACGGCAGAATTCGGTGATT
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--684--7411Chr09:17995199..17995223 (25 bp)
GTGATTCACCTTTCTGGCTATCGAC
LOC_Os09g29584
OsAffx.6442.1.S1_s_at--596--7111Chr09:17995158..17995182 (25 bp)
GTCATCGGATGTCAAACTATGGCTT
LOC_Os09g29584
Target Sequence 
GCCAGCCTTTTTTGTGTCTGTCTGTCGGCTGTCTGGGTGGCGGCAGCAACGGCCGATATACCGGCAGGGCAACGCCCCGG
TTGCCCGGAGAGGTGTGGCGACGTCGAGATCCCGTTCCCGTTCGGCATCGGCAAGCACTGCGCGATGCAGACGAAGTATC
CGTTTGATCTCGACTGCTTGGACGTGAATGGCACCAAGAAGCCTTTCTACAACAATAACGAGGTTACCAAGATTTCGGTG
CAGGAGGGCAAGGCATGGATGAAGTTGGGCATATCCAGTCAGTGTTATGACCACGTGACAGGCCATATCCTGTACGACAG
CAACGCAACGGCAGAATTCGGTGATTCACCTTTCTGGCTATCGACCGAAAACAAGATCATCGTCATCGGATGTCAAACTA
TGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6442.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis