Browse Element(s) Details


OsAffx.17997.1.S1_x_at

Description tigr:9637.m02979
TID=OsAffx.17997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3555010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35530NANA9+20415020..20419994hypothetical protein
LOC_Os09g35540Os.5704.1.S1_at11/119+20422660..20424602expressed protein
LOC_Os09g35550OsAffx.17997.1.S1_at11/119+20429967..20431440hypothetical protein
LOC_Os09g35550OsAffx.17997.1.S1_x_at10/119+20429967..20431440hypothetical protein
LOC_Os09g35560OsAffx.17998.1.S1_at11/119+20434121..20434514hypothetical protein
LOC_Os09g35570NANA9+20435985..20439435hypothetical protein
LOC_Os09g35580OsAffx.4557.1.S1_s_at1/119+20450238..20450736hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17997.1.S1_x_at--1130--2691Chr09:20429999..20430023 (25 bp)
AAGCTTGACGCCCATCGAAGAGAAG
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--671--10751Chr09:20430003..20430027 (25 bp)
TTGACGCCCATCGAAGAGAAGGAGC
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--396--1471Chr09:20430019..20430043 (25 bp)
AGAAGGAGCACCTCATCGCCAACGC
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--185--8411Chr09:20430060..20430084 (25 bp)
GGCCCGCATCAGGAACACGTCATTG
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--148--4971Chr09:20430065..20430089 (25 bp)
GCATCAGGAACACGTCATTGACGGA
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--194--831Chr09:20430091..20430115 (25 bp)
ATGGAGGTCACGGTGTAGACCCCCT
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--1000--7431Chr09:20430103..20430127 (25 bp)
GTGTAGACCCCCTTGGTGTAGAGCA
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--962--7411Chr09:20430118..20430142 (25 bp)
GTGTAGAGCACCTCGACCTTGGCAA
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--1018--5931Chr09:20430123..20430147 (25 bp)
GAGCACCTCGACCTTGGCAAGGCTG
LOC_Os09g35550
OsAffx.17997.1.S1_x_at--394--4531NONE
GCCGCCGCCTCAATTTTGTATGGGT
NONE
OsAffx.17997.1.S1_x_at--819--3731Chr09:20431359..20431379 (21 bp)
CTCAATTTTGTATGGGTCATGAAAT
LOC_Os09g35550
Target Sequence 
AAGCTTGACGCCCATCGAAGAGAAGGAGCACCTCATCGCCAACGCCAATGCTCTCCTTTCAGGCCCGCATCAGGAACACG
TCATTGACGGAGATGGAGGTCACGGTGTAGACCCCCTTGGTGTAGAGCACCTCGACCTTGGCAAGGCTGGGGCCAGGCGG
CCGCCGCCGCCTCAATTTTGTATGGGTCATGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17997.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis