Browse Element(s) Details


Os.5704.1.S1_at

Description gb:AK070906.1
DB_XREF= gi:32980929
TID=Os.5704.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065L17, full insert sequence.
FL= gb:AK070906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3554011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35020NANA9+20398856..20399777AP2 domain containing protein, expressed
LOC_Os09g35030Os.14125.1.S1_at11/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35030Os.57517.1.S1_x_at1/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35530NANA9+20415020..20419994hypothetical protein
LOC_Os09g35540Os.5704.1.S1_at11/119+20422660..20424602expressed protein
LOC_Os09g35550OsAffx.17997.1.S1_at11/119+20429967..20431440hypothetical protein
LOC_Os09g35550OsAffx.17997.1.S1_x_at10/119+20429967..20431440hypothetical protein
LOC_Os09g35560OsAffx.17998.1.S1_at11/119+20434121..20434514hypothetical protein
LOC_Os09g35570NANA9+20435985..20439435hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5704.1.S1_at--1138--2331Chr09:20423904..20423928 (25 bp)
AAAGACCGTGACCTCAGCATTGGAG
LOC_Os09g35540
Os.5704.1.S1_at--1056--4951Chr09:20423929..20423953 (25 bp)
GCATATGCGCGCAGCTTTTCAAGAA
LOC_Os09g35540
Os.5704.1.S1_at--720--7091Chr09:20424096..20424120 (25 bp)
GTCACTGTTGACATGTCCAAGGGCT
LOC_Os09g35540
Os.5704.1.S1_at--902--2871Chr09:20424114..20424138 (25 bp)
AAGGGCTACGTAATCTCCGCTTGTT
LOC_Os09g35540
Os.5704.1.S1_at--31--10291Chr09:20424137..20424161 (25 bp)
TTTGCTCCCTACTGACTTTGGCGAT
LOC_Os09g35540
Os.5704.1.S1_at--545--10811Chr09:20424174..20424198 (25 bp)
TTGTATGGTGTCATGCTGCCGCGTA
LOC_Os09g35540
Os.5704.1.S1_at--177--2531Chr09:20424210..20424345 (25 bp)
AACTTCTTCCGGTTCTGATTGGCAA
LOC_Os09g35540
Os.5704.1.S1_at--415--6731Chr09:20424423..20424447 (25 bp)
GTTCTCTTCTTATCTTTCTCTAAGC
LOC_Os09g35540
Os.5704.1.S1_at--856--8151Chr09:20424462..20424486 (25 bp)
GGAAACTTTATCTGCACTGCAAGCT
LOC_Os09g35540
Os.5704.1.S1_at--111--1511Chr09:20424492..20424516 (25 bp)
AGCACTGATGATCGGCATGCAATCT
LOC_Os09g35540
Os.5704.1.S1_at--700--1451Chr09:20424572..20424596 (25 bp)
AGAATCACCTTATGTGACCTCACCT
LOC_Os09g35540
Target Sequence 
AAAGACCGTGACCTCAGCATTGGAGGCATATGCGCGCAGCTTTTCAAGAAGATTCCTATATGCGCAANCGATGCTGGAGN
CCGATGCCGAATATGGCACCGNNGAGTCCTATCCTGAGCANCGGNGGATNGCAGCCTCCATNTCCTTATCGTGAATGATA
ACAGCAATGAAATGCTCGAGAATCAGAATATTATGGTCACTGTTGACATGTCCAAGGGCTACGTAATCTCCGCTTGTTTG
CTCCCTACTGACTTTGGCGATCAGCTGCCTGGGTTGTATGGTGTCATGCTGCCGCGTATGCTGGGCTCCAACTTCTTCCG
GTTCTGATTGGCAAAAAAAAGAAGCACATGGAACGGCAATGAGAAAACACATGCAATTTATCTATATTATTAGATGTAAT
CGGNATATTTGTAGTTCTCTTCTTATCTTTCTCTAAGCACTATGTTAGTGGTGGAAACTTTATCTGCACTGCAAGCTATC
TTAGCACTGATGATCGGCATGCAATCTTAGTAAAATTTCTTGAGATGAGAATGTGCCATGTTTGTAAAAGATGGACCTAT
TAAGAATCACCTTATGTGACCTCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis