Browse Element(s) Details


Os.14125.1.S1_at

Description gb:AY345233.1
DB_XREF= gi:33637697
TID=Os.14125.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14125 (NCBI UniGene Cluster)
DEF=Oryza sativa transcription factor RCBF3 mRNA, complete cds.
PROD=transcription factor RCBF3
FL= gb:AF494422.1 gb:AK105599.1 gb:AK071519.1 gb:AF300970.1 gb:AY345233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3503011/11DREB1A protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed
LOC_Os09g35010Os.5816.1.S1_at11/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35010Os.57517.1.S1_x_at2/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35020NANA9+20398856..20399777AP2 domain containing protein, expressed
LOC_Os09g35030Os.14125.1.S1_at11/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35030Os.57517.1.S1_x_at1/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35530NANA9+20415020..20419994hypothetical protein
LOC_Os09g35540Os.5704.1.S1_at11/119+20422660..20424602expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14125.1.S1_at--1127--1631Chr09:20403187..20403211 (25 bp)
AGCGACCTGGCGTTCGAACTGGACG
LOC_Os09g35030
Os.14125.1.S1_at--578--8451Chr09:20403180..20403204 (25 bp)
TGGCGTTCGAACTGGACGTCCTGAG
LOC_Os09g35030
Os.14125.1.S1_at--1066--9351Chr09:20403174..20403198 (25 bp)
TCGAACTGGACGTCCTGAGTGACAT
LOC_Os09g35030
Os.14125.1.S1_at--314--3911Chr09:20403169..20403193 (25 bp)
CTGGACGTCCTGAGTGACATGGGCT
LOC_Os09g35030
Os.14125.1.S1_at--93--7671Chr09:20403115..20403139 (25 bp)
GGGATGCTCATGGAGCCACCATCGG
LOC_Os09g35030
Os.14125.1.S1_at--216--9091Chr09:20403111..20403135 (25 bp)
TGCTCATGGAGCCACCATCGGCGGC
LOC_Os09g35030
Os.14125.1.S1_at--35--5771Chr09:20403055..20403079 (25 bp)
GACGTCCCACTCTGGAGCTACTAGA
LOC_Os09g35030
Os.14125.1.S1_at--527--1571Chr09:20403040..20403064 (25 bp)
AGCTACTAGAGCTCAATCAACTGTA
LOC_Os09g35030
Os.14125.1.S1_at--271--10391Chr09:20403001..20403025 (25 bp)
TTTTCTCTCTTTTCTGGCTTCCGAT
LOC_Os09g35030
Os.14125.1.S1_at--898--9551Chr09:20402994..20403018 (25 bp)
TCTTTTCTGGCTTCCGATGCCAAAA
LOC_Os09g35030
Os.14125.1.S1_at--29--3911Chr09:20402988..20403012 (25 bp)
CTGGCTTCCGATGCCAAAATTTTGG
LOC_Os09g35030
Target Sequence 
AGCGACCTGGCGTTCGAACTGGACGTCCTGAGTGACATGGGCTGGGACCTGTACTACGCGAGCTTGGCGCAGGGGATGCT
CATGGAGCCACCATCGGCGGCGCTCGGCGACGACGGTGACGCCATCCTCGCCGACGTCCCACTCTGGAGCTACTAGAGCT
CAATCAACTGTACAATTTTGCCTCTTTTTTCTCTCTTTTCTGGCTTCCGATGCCAAAATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis