Browse Element(s) Details


Os.51759.2.S1_s_at

Description gb:AK063628.1
DB_XREF= gi:32973646
TID=Os.51759.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F04, full insert sequence.
FL= gb:AK063628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3498011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed
LOC_Os09g35010Os.5816.1.S1_at11/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35010Os.57517.1.S1_x_at2/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35020NANA9+20398856..20399777AP2 domain containing protein, expressed
LOC_Os09g35030Os.14125.1.S1_at11/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35030Os.57517.1.S1_x_at1/119+20402932..20403851DREB1A protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51759.2.S1_s_at--30--6311Chr09:20383034..20383058 (25 bp)
GATGAAGGGCATCCTGAAAACTTGG
LOC_Os09g34980
Os.51759.2.S1_s_at--604--4871Chr09:20383085..20383109 (25 bp)
GCTTTGGAGACCTGAAGTTCATCTG
LOC_Os09g34980
Os.51759.2.S1_s_at--27--6751Chr09:20383101..20383125 (25 bp)
GTTCATCTGCCAGAAGATATCTGAT
LOC_Os09g34980
Os.51759.2.S1_s_at--503--10451Chr09:20383144..20383168 (25 bp)
TTAGTACTGTGTCACTGTTCCCCAA
LOC_Os09g34980
Os.51759.2.S1_s_at--764--1951Chr09:20383149..20383173 (25 bp)
ACTGTGTCACTGTTCCCCAAACGTT
LOC_Os09g34980
Os.51759.2.S1_s_at--399--7131Chr09:20383176..20383200 (25 bp)
GTCATTTCCTTTTAGGAACTCTATC
LOC_Os09g34980
Os.51759.2.S1_s_at--791--7671Chr09:20383203..20383227 (25 bp)
GGGTTTTGCATGGAGCCTGTTCCAG
LOC_Os09g34980
Os.51759.2.S1_s_at--1071--4451Chr09:20383217..20383241 (25 bp)
GCCTGTTCCAGCTTGCAAAACTTTT
LOC_Os09g34980
Os.51759.2.S1_s_at--444--10371Chr09:20383241..20383265 (25 bp)
TTTTTTCTCTTGCTTGCAGTACTTT
LOC_Os09g34980
Os.51759.2.S1_s_at--680--6753Chr09:20383267..20383291 (25 bp)
GTCTTGGGCTTTCTCCAAAAAGCCG
LOC_Os09g34980
Os.51759.2.S1_s_at--44--2431Chr09:20383284..20383308 (25 bp)
AAAAGCCGGATCGTTATCTAATATA
LOC_Os09g34980
Target Sequence 
GATGAAGGGCATCCTGAAAACTTGGATAGAAGAGATGAGTTGGAAAATGAAGCTTTGGAGACCTGAAGTTCATCTGCCAG
AAGATATCTGATAATTTTCTAAGAAATGCCTTAGTACTGTGTCACTGTTCCCCAAACGTTTTGTCATTTCCTTTTAGGAA
CTCTATCAGGGGTTTTGCATGGAGCCTGTTCCAGCTTGCAAAACTTTTTTTTTTCTCTTGCTTGCAGTACTTTTGTCTTG
GGCTTTCTCCAAAAAGCCGGATCGTTATCTAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51759.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis