Browse Element(s) Details


Os.15713.1.S2_a_at

Description gb:AK105872.1
DB_XREF= gi:32991081
TID=Os.15713.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B04, full insert sequence.
FL= gb:AK066703.1 gb:AK104903.1 gb:AK105872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3497011/11Arsenical pump-driving ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed
LOC_Os09g35010Os.5816.1.S1_at11/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35010Os.57517.1.S1_x_at2/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35020NANA9+20398856..20399777AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15713.1.S2_a_at--125--8191Chr09:20371887..20371908 (22 bp)
GGAAGCCGTTGAGTCTAAACTTCTA
LOC_Os09g34970
Os.15713.1.S2_a_at--148--6691Chr09:20371788..20371812 (25 bp)
GTTGCCCTTGCTTCCAGAAGAGGTA
LOC_Os09g34970
Os.15713.1.S2_a_at--1086--1011Chr09:20371680..20371704 (25 bp)
AGGTATGCGGCGTCCAGGCTCTGCA
LOC_Os09g34970
Os.15713.1.S2_a_at--267--911Chr09:20371665..20371689 (25 bp)
AGGCTCTGCAGAACTTTTCACGGCA
LOC_Os09g34970
Os.15713.1.S2_a_at--198--10331Chr09:20371650..20371674 (25 bp)
TTTCACGGCATTTCCTTACACCATA
LOC_Os09g34970
Os.15713.1.S2_a_at--416--5171Chr09:20371556..20371580 (25 bp)
GCAAGAGGCCGAGTCAGAACTAGAT
LOC_Os09g34970
Os.15713.1.S2_a_at--933--5011Chr09:20371514..20371538 (25 bp)
GCAGGTAGCATAATCTTTTTTCACA
LOC_Os09g34970
Os.15713.1.S2_a_at--911--5971Chr09:20371442..20371466 (25 bp)
GAGAAACATCTCCTTTTTGTCTCGC
LOC_Os09g34970
Os.15713.1.S2_a_at--975--10251Chr09:20371427..20371451 (25 bp)
TTTGTCTCGCTACATACTGCAGTCG
LOC_Os09g34970
Os.15713.1.S2_a_at--802--2631Chr09:20371364..20371388 (25 bp)
AACCTTGTTATAGCTATTGGCAGAA
LOC_Os09g34970
Os.15713.1.S2_a_at--807--5611Chr09:20371321..20371345 (25 bp)
GACAAATGTGGGATTTTGCCCTTAT
LOC_Os09g34970
Target Sequence 
GGAAGCCGTTGAGTCTAAACTTCTAAAGGCACGGATAAAAATGCAACAAAAATATATTGATCAGTTCCATATGTTATATG
ATGACTTCAACATAACCAAGTTGCCCTTGCTTCCAGAAGAGGTATGCGGCGTCCAGGCTCTGCAGAACTTTTCACGGCAT
TTCCTTACACCATACAAGGCNGCTCTGAAAAGAGGTACAGTGGAGGAGGTGGAACAGAGAGTATCACTACTAAAATCAGC
ACTGCAAGAGGCCGAGTCAGAACTAGATAGACTAAGGAAAGGGAAGCAGGTAGCATAATCTTTTTTCACATGTCAAGTGC
ATGGGAATGCCAAAATCGTNAAAAAAGCGGAACTAGAGAGAAACATCTCCTTTTTGTCTCGCTACATACTGCAGTCGATT
TTATAAAATTTTATTTTTCTCCAAATGGGATTTTTAACCTTGTTATAGCTATTGGCAGAAAGTGTACTTCTAGAGTGAGA
CAAATGTGGGATTTTGCCCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15713.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis