Browse Element(s) Details


Os.25479.1.S1_at

Description gb:AK063534.1
DB_XREF= gi:32973552
TID=Os.25479.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B09, full insert sequence.
FL= gb:AK063534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3500011/11DNA repair protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed
LOC_Os09g35010Os.5816.1.S1_at11/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35010Os.57517.1.S1_x_at2/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35020NANA9+20398856..20399777AP2 domain containing protein, expressed
LOC_Os09g35030Os.14125.1.S1_at11/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35030Os.57517.1.S1_x_at1/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35530NANA9+20415020..20419994hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009408biological_processresponse to heat
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25479.1.S1_at--112--4771Chr09:20392570..20392594 (25 bp)
GCTGCATTTCCTGATGAAGCACAAA
LOC_Os09g35000
Os.25479.1.S1_at--463--3231Chr09:20392987..20393011 (25 bp)
CAAGCTCAACGTGGCAGGTTTCGAA
LOC_Os09g35000
Os.25479.1.S1_at--773--5511Chr09:20393112..20393136 (25 bp)
GAAAATCCTCCGATGTGGACCTCAG
LOC_Os09g35000
Os.25479.1.S1_at--1094--5711Chr09:20393177..20393201 (25 bp)
GACTGACTGACAATTGGTCTCCCTT
LOC_Os09g35000
Os.25479.1.S1_at--366--10071Chr09:20393214..20393238 (25 bp)
TAGTCCTGCTGCTACTGTTGTACAT
LOC_Os09g35000
Os.25479.1.S1_at--970--9811Chr09:20393246..20393270 (25 bp)
TAACATTTCTTTCGGCCAATGGATG
LOC_Os09g35000
Os.25479.1.S1_at--670--831Chr09:20393264..20393288 (25 bp)
ATGGATGTACATTGCGTGGCCCGGT
LOC_Os09g35000
Os.25479.1.S1_at--344--8171Chr09:20393299..20393323 (25 bp)
GGAACATGCATGTCTTGTAGCTGAT
LOC_Os09g35000
Os.25479.1.S1_at--408--9011Chr09:20393345..20393369 (25 bp)
TGAATCTTGTATCTGCTGCAACCAT
LOC_Os09g35000
Os.25479.1.S1_at--310--191Chr09:20393374..20393398 (25 bp)
ATTTCATGCCATATCGCATCACTGC
LOC_Os09g35000
Os.25479.1.S1_at--269--4971Chr09:20393389..20393413 (25 bp)
GCATCACTGCTTGCGTAGCATGGAA
LOC_Os09g35000
Target Sequence 
GCTGCATTTCCTGATGAAGCACAAAGATTTCAGGAAGAACAGAGGCTGAAAGAAGCAAAGTCAATAGCACGGAAATCCAA
GCTCAACGTGGCAGGTTTCGAAACACCAAAAGGTCCAAGGCCTAGTGGAGTTCAGCTTAGCATCAAGGAGTTCTACCGCT
CCAAGAAAGGGCTGAGTGGCGACTCAGGGAAGGACGGCTCAAGAAAATCCTCCGATGTGGACCTCAGCAAGAACTTGCCC
AAGTCTGTCCGACGACGCCTCCTCTTCGACTGACTGACAATTGGTCTCCCTTCTGTCTTCCCAGTAGTCCTGCTGCTACT
GTTGTACATGTTCCANTAACATTTCTTTCGGCCAATGGATGTACATTGCGTGGCCCGGTTTTTGTACAGGGAACATGCAT
GTCTTGTAGCTGATGAGAAACAGTGTTTTGGGGGTTGAATCTTGTATCTGCTGCAACCATGTATATTTCATGCCATATCG
CATCACTGCTTGCGTAGCATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis