Browse Element(s) Details


Os.5816.1.S1_at

Description gb:AY166833.1
DB_XREF= gi:27228309
TID=Os.5816.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5816 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative DRE-binding protein 1B mRNA, complete cds.
PROD=putative DRE-binding protein 1B
FL= gb:AF300972.1 gb:AK062422.1 gb:AY166833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3501011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed
LOC_Os09g35010Os.5816.1.S1_at11/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35010Os.57517.1.S1_x_at2/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35020NANA9+20398856..20399777AP2 domain containing protein, expressed
LOC_Os09g35030Os.14125.1.S1_at11/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35030Os.57517.1.S1_x_at1/119+20402932..20403851DREB1A protein, putative, expressed
LOC_Os09g35530NANA9+20415020..20419994hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5816.1.S1_at--848--5751Chr09:20395142..20395166 (25 bp)
GACGGGTTCAGGTTCGGCGGGATGG
LOC_Os09g35010
Os.5816.1.S1_at--692--831Chr09:20395121..20395145 (25 bp)
ATGGACGCCGGGTCGTACTACGCGA
LOC_Os09g35010
Os.5816.1.S1_at--932--1811Chr09:20395117..20395141 (25 bp)
ACGCCGGGTCGTACTACGCGAGCTT
LOC_Os09g35010
Os.5816.1.S1_at--441--4851Chr09:20395006..20395030 (25 bp)
GCTACTAATCAAAATCTCGCACTGA
LOC_Os09g35010
Os.5816.1.S1_at--558--3271Chr09:20394997..20395021 (25 bp)
CAAAATCTCGCACTGAAAAGTGTGG
LOC_Os09g35010
Os.5816.1.S1_at--276--7331Chr09:20394922..20394946 (25 bp)
GTGAATTTAGAACAGAGTAGGCAAT
LOC_Os09g35010
Os.5816.1.S1_at--278--6171Chr09:20394891..20394915 (25 bp)
GAGGATGAATGGCAATTTTTGTAAT
LOC_Os09g35010
Os.5816.1.S1_at--260--3431Chr09:20394854..20394878 (25 bp)
CAGATTTCTCCCTCCTTTTGTGATT
LOC_Os09g35010
Os.5816.1.S1_at--557--10311Chr09:20394850..20394874 (25 bp)
TTTCTCCCTCCTTTTGTGATTCCAT
LOC_Os09g35010
Os.5816.1.S1_at--391--4291Chr09:20394844..20394868 (25 bp)
CCTCCTTTTGTGATTCCATCTGATT
LOC_Os09g35010
Os.5816.1.S1_at--344--10411Chr09:20394839..20394863 (25 bp)
TTTTGTGATTCCATCTGATTTTGAA
LOC_Os09g35010
Target Sequence 
GACGGGTTCAGGTTCGGCGGGATGGACGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGCTGCTCGTCGAGCCGCCGGC
CGCCGGAGCGTGGTGGGAGGACGGCGAGCTCGCCGGCTCCGACATGCCGCTCTGGAGCTACTAATCAAAATCTCGCACTG
AAAAGTGTGGACAAATTTTGATTCTCCAGAAATTGGGGGAAAAAAGAGAACAGAGTATTGGTGAATTTAGAACAGAGTAG
GCAATGAGACTGAGGATGAATGGCAATTTTTGTAATTTTGGAATGTGCCAGATTTCTCCCTCCTTTTGTGATTCCATCTG
ATTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis