Browse Element(s) Details


Os.6789.1.S1_at

Description gb:AK101064.1
DB_XREF= gi:32986273
TID=Os.6789.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023A13, full insert sequence.
FL= gb:AK101064.1 gb:AK063755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3496011/11Hydroxymethylglutaryl-CoA synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative
LOC_Os09g35000Os.25479.1.S1_at11/119+20389470..20393425DNA repair protein, putative, expressed
LOC_Os09g35010Os.5816.1.S1_at11/119+20394743..20395724AP2 domain containing protein, expressed
LOC_Os09g35010Os.57517.1.S1_x_at2/119+20394743..20395724AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004421molecular_functionhydroxymethylglutaryl-CoA synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6789.1.S1_at--766--2511Chr09:20369848..20369872 (25 bp)
AACATTGCTTCAGTGCTTAATGCCA
LOC_Os09g34960
Os.6789.1.S1_at--1036--3011Chr09:20369866..20369890 (25 bp)
AATGCCACGGAGAAGCTTGAGTCAA
LOC_Os09g34960
Os.6789.1.S1_at--49--2351Chr09:20370252..20370276 (25 bp)
AAAGACACGAGCTTGTTGCCTCCTG
LOC_Os09g34960
Os.6789.1.S1_at--457--7991Chr09:20370277..20370301 (25 bp)
GGACGTTCTACCTCACCAGGGTTGA
LOC_Os09g34960
Os.6789.1.S1_at--636--6651Chr09:20370297..20370321 (25 bp)
GTTGACTCCATGTACCGAAGATTCT
LOC_Os09g34960
Os.6789.1.S1_at--1068--4351Chr09:20370404..20370428 (25 bp)
CCACTAGTGGCACGCATGGCATGAT
LOC_Os09g34960
Os.6789.1.S1_at--945--7731Chr09:20370473..20370497 (25 bp)
GGTGTTTCCAGCCTAGTGTAGTAGT
LOC_Os09g34960
Os.6789.1.S1_at--1059--351Chr09:20370505..20370529 (25 bp)
ATAAGTGTTCTCCACACCTGTTATC
LOC_Os09g34960
Os.6789.1.S1_at--587--3871Chr09:20370522..20370546 (25 bp)
CTGTTATCCATATCTCCTCTAATTT
LOC_Os09g34960
Os.6789.1.S1_at--908--111Chr09:20370596..20370620 (25 bp)
ATTCTTGTTTCTTCTAGCTTGTGTT
LOC_Os09g34960
Os.6789.1.S1_at--686--7431Chr09:20370616..20370640 (25 bp)
GTGTTTCTGCTGTCACTTGAAGTTA
LOC_Os09g34960
Target Sequence 
AACATTGCTTCAGTGCTTAATGCCACGGAGAAGCTTGAGTCAAGACNNTATGNCCNTTGCCCNGAGAAATTTGTGGAGAC
GCTGAAGCTGATGGAGCACCGATACGGCGCAAAAGATTTCGAGACGTGCAAAGACACGAGCTTGTTGCCTCCTGGGACGT
TCTACCTCACCAGGGTTGACTCCATGTACCGAAGATTCTATGAGAGGAAGGCCGACGAGGAGATCGCTGCAGCCAAAGCC
AAGTACAGTAATGGACATGCCACCAATGGCTATGCCAATGGCCACTAGTGGCACGCATGGCATGATGGCTGCTGCTGATA
TTGATTTCTGGTTTGATAAGTTCATGATTAGGTGTTTCCAGCCTAGTGTAGTAGTTTCTCAAATAAGTGTTCTCCACACC
TGTTATCCATATCTCCTCTAATTTTTTTGTATTGAATCAGACAGACTAGTGAGACATTTCTGTAGTATCAATCATTCTTG
TTTCTTCTAGCTTGTGTTTCTGCTGTCACTTGAAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis