Browse Element(s) Details


Os.11357.1.S1_at

Description gb:AK060889.1
DB_XREF= gi:32970907
TID=Os.11357.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B11, full insert sequence.
FL= gb:AK101403.1 gb:AK060889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3491011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016070biological_processRNA metabolism
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0017151molecular_functionDEAD/H-box RNA helicase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11357.1.S1_at--670--5051Chr09:20345403..20345909 (25 bp)
GCAGCAGGATTTGTTCTTTCTACTT
LOC_Os09g34910
Os.11357.1.S1_at--913--2311Chr09:20345947..20345971 (25 bp)
AAAGGGTATAACCATCACTGCTGAT
LOC_Os09g34910
Os.11357.1.S1_at--779--3331Chr09:20345962..20345986 (25 bp)
CACTGCTGATGGGACAGGTGCTGTA
LOC_Os09g34910
Os.11357.1.S1_at--995--2891Chr09:20346218..20346241 (24 bp)
AAGGTGCACAGAACGCTGCCATGGT
LOC_Os09g34910
Os.11357.1.S1_at--639--1831Chr09:20346229..20346253 (25 bp)
ACGCTGCCATGGTGACTGTCGAGGA
LOC_Os09g34910
Os.11357.1.S1_at--581--5531Chr09:20346257..20346281 (25 bp)
GAAACAATTGCCACCCTTGCAAGAG
LOC_Os09g34910
Os.11357.1.S1_at--654--8071Chr09:20346443..20346467 (25 bp)
GGAGCACTCTCATTTTTGACCTATA
LOC_Os09g34910
Os.11357.1.S1_at--1129--5831Chr09:20346460..20346484 (25 bp)
GACCTATAGGTTGAGCCAAGGCACA
LOC_Os09g34910
Os.11357.1.S1_at--1029--4391Chr09:20346492..20346516 (25 bp)
GCCAAAATTTTGACTGCGCCATGTA
LOC_Os09g34910
Os.11357.1.S1_at--409--4171Chr09:20346508..20346532 (25 bp)
CGCCATGTATCGGTTTTTTGTTTAT
LOC_Os09g34910
Os.11357.1.S1_at--216--10231Chr09:20346594..20346618 (25 bp)
TATTGATCTGATACTTGCTACATAG
LOC_Os09g34910
Target Sequence 
GCAGCAGGATTTGTTCTTTCTACTTTGAAAAGGTTTATGCCAGAAGAGAGACTTGCAGATGTAAAGGGTATAACCATCAC
TGCTGATGGGACAGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGGTGCACAGAACGCTGCCA
TGGTGACTGTCGAGGAAGTGAAACAATTGCCACCCTTGCAAGAGAGGGAACAGTCTGGTGGCAGCCGAGGTGGAGGAAGG
TTTGGAAACAGGAGATTTTCTGGTGGTGGTGGTGGCCGGGGTGGAGGCGGCAGAGGGTTCGGTGGAGGCAGAGGCAGGGG
AGGTGGCGGCGGCAACAGGTTTAACAAGAGGTACTAGCTGTTGCTGGAGCACTCTCATTTTTGACCTATAGGTTGAGCCA
AGGCACAGGGAATCGCCAAAATTTTGACTGCGCCATGTATCGGTTTTTTGTTTATTTGTTAGTGTTTGTGTGTTCGAGAT
TATGATGATCAATTTTGCCATCGCAATAGTGTACAATATTGATCTGATACTTGCTACATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis