Browse Element(s) Details


Os.5537.1.S1_s_at

Description gb:AA751544
DB_XREF= gi:2798250
DB_XREF=96AS0273
CLONE=96AS0273
TID=Os.5537.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5537 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179719.1 (A.thaliana) putative bZIP transcription factor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34850Os.22786.1.S1_at11/119+20313087..20315233DNA polymerase delta subunit 4 family, putative, expressed
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5537.1.S1_s_at--171--8691Chr09:20327765..20327789 (25 bp)
TGTCTGAAAAATTGGCGACGGCTCA
LOC_Os09g34880
Os.5537.1.S1_s_at--215--7371Chr09:20329459..20329483 (25 bp)
GTGAGTTCGTCATGCCAAATGGTAC
LOC_Os09g34880
Os.5537.1.S1_s_at--166--7591Chr09:20329479..20329503 (25 bp)
GGTACACACGAAGAAACGGTCGCTC
LOC_Os09g34880
Os.5537.1.S1_s_at--425--2571Chr09:20329493..20329517 (25 bp)
AACGGTCGCTCGGTTGATCGAACTG
LOC_Os09g34880
Os.5537.1.S1_s_at--347--6391Chr09:20329508..20329532 (25 bp)
GATCGAACTGCTGGAGCCAGAAACA
LOC_Os09g34880
Os.5537.1.S1_s_at--909--5531Chr09:20329527..20329551 (25 bp)
GAAACACAGGCTGGACCATCACAAA
LOC_Os09g34880
Os.5537.1.S1_s_at--1083--5391Chr09:20329580..20329604 (25 bp)
GAAGCTTTAGGGTGATTTCTGATGA
LOC_Os09g34880
Os.5537.1.S1_s_at--1057--9691Chr09:20329647..20329671 (25 bp)
TCAAACATGAATTCGCTTAGACAGC
LOC_Os09g34880
Os.5537.1.S1_s_at--211--4891Chr09:20329661..20329685 (25 bp)
GCTTAGACAGCCGAACCAATAGATA
LOC_Os09g34880
Os.5537.1.S1_s_at--775--7411Chr09:20329702..20329726 (25 bp)
GTGTTGTGCTACAGTTATTTTGCTA
LOC_Os09g34880
Os.5537.1.S1_s_at--7--8971Chr09:20329742..20329766 (25 bp)
TGACACCCATGTGGGCTTCTGTAAT
LOC_Os09g34880
Target Sequence 
TGTCTGAAAAATTGGCGACGGCTCAGAGNACATTTAATGAGCTTTTAGCTCAAAACAATGAGCTGAAAATCAAGATACAA
GAAACGGGTAGGGAACGCCAGATGAAAGAANGCTATATTCAAATCAATAGGTTATGAGTCACTTNCAAGTTGTTGTTNGA
TGGTGAGTTCGTCATGCCAAATGGTACACACGAAGAAACGGTCGCTCGGTTGATCGAACTGCTGGAGCCAGAAACACAGG
CTGGACCATCACAAATCCAGGGNATATCAGCCATAACAAAGTTTGAAGCTTTAGGGTGATTTCTGATGAGAGGAAACTTT
TGAAAGGGGAATGTCAAACTATACTGCAGATTCAAACATGAATTCGCTTAGACAGCCGAACCAATAGATAATTCANCTAT
TACTGAGTGTTGTGCTACAGTTATTTTGCTAAAAGTTTGGGTGAACTGACACCCATGTGGGCTTCTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5537.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis