Browse Element(s) Details


Os.55378.1.S1_at

Description gb:AK107978.1
DB_XREF= gi:32993187
TID=Os.55378.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E03, full insert sequence.
FL= gb:AK107978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3489011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34850Os.22786.1.S1_at11/119+20313087..20315233DNA polymerase delta subunit 4 family, putative, expressed
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55378.1.S1_at--222--451Chr09:20331679..20331703 (25 bp)
ATCTATCTGTCTTTGGTTGTATTCA
LOC_Os09g34890
Os.55378.1.S1_at--864--3711Chr09:20330633..20330657 (25 bp)
CTACTACAGCTTGTGCGGTGTTTTT
LOC_Os09g34890
Os.55378.1.S1_at--1035--6811Chr09:20330614..20330638 (25 bp)
GTTTTTGTGCTGGTTTGCCTATAAA
LOC_Os09g34890
Os.55378.1.S1_at--666--9811Chr09:20330593..20330617 (25 bp)
TAAAACCGTAGCTTTCTTGGTCTCT
LOC_Os09g34890
Os.55378.1.S1_at--273--9591Chr09:20330579..20330603 (25 bp)
TCTTGGTCTCTTGGTGATCATGGTT
LOC_Os09g34890
Os.55378.1.S1_at--484--151Chr09:20330532..20330556 (25 bp)
ATTAGCTACCGGTGCTATCAGCTTT
LOC_Os09g34890
Os.55378.1.S1_at--24--1571Chr09:20330513..20330537 (25 bp)
AGCTTTGGTTTCTTCGTGTCAGGCC
LOC_Os09g34890
Os.55378.1.S1_at--573--7451Chr09:20330498..20330522 (25 bp)
GTGTCAGGCCAGTTATGATCAGCCA
LOC_Os09g34890
Os.55378.1.S1_at--48--8851Chr09:20330483..20330507 (25 bp)
TGATCAGCCAGACAGCCACTAGGTT
LOC_Os09g34890
Os.55378.1.S1_at--990--3311Chr09:20330467..20330491 (25 bp)
CACTAGGTTTTTGGAGCTCTTCTGT
LOC_Os09g34890
Os.55378.1.S1_at--780--9571Chr09:20330450..20330474 (25 bp)
TCTTCTGTGTGTTCTTGTGGCATAA
LOC_Os09g34890
Target Sequence 
ATCTATCTGTCTTTGGTTGTATTCAGGCAGGACAATCAACAGCAGCAGCAGAGAAAGCAGCCGGCTCATGCCCCCATGGC
TCTCAGGAGGAAGAGGCTAAGGCTGAGGAGGAGGAGAGAGACCATGAGGAGATCTGATGGAATGGAGATGGAGATGGTGA
ACCTGAAGCTCTACCTGGAGAACAGGTGCATCCTGGAGGAGAACGAGAGGCTGAGGGAGAAGGCCAGCGCGCTCCACCGG
GAGAACCTCGCGCTGCGCGCCGACCTGCGCAACACATCGTCGCCGGCGACGACGGCGGCCGCCGCCTCCAGCTGCTGAAC
TGAGCACTCGCCGCCTCCTTGCTAGCTACTACAGCTTGTGCGGTGTTTTTGTGCTGGTTTGCCTATAAAACCGTAGCTTT
CTTGGTCTCTTGGTGATCATGGTTGGCTGGCTGGTTCTAGCTATATATTAGCTACCGGTGCTATCAGCTTTGGTTTCTTC
GTGTCAGGCCAGTTATGATCAGCCAGACAGCCACTAGGTTTTTGGAGCTCTTCTGTGTGTTCTTGTGGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis