Browse Element(s) Details


OsAffx.6480.1.S1_at

Description tigr:9637.m02967
TID=OsAffx.6480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hydrolase, alphabeta fold family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3486011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34850Os.22786.1.S1_at11/119+20313087..20315233DNA polymerase delta subunit 4 family, putative, expressed
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6480.1.S1_at--938--10191Chr09:20319008..20319032 (25 bp)
TATATTGCTCGGTCACTCTTTTGGA
LOC_Os09g34860
OsAffx.6480.1.S1_at--174--1191Chr09:20319049..20319150 (25 bp)
AGTACGCTTTACAGCATCCTGAGCA
LOC_Os09g34860
OsAffx.6480.1.S1_at--142--3271Chr09:20319155..20319179 (25 bp)
CAACACTTGATCTTGGTCGGCCCTG
LOC_Os09g34860
OsAffx.6480.1.S1_at--586--5931Chr09:20319200..20319224 (25 bp)
GAGCATAGCTCTGAGTGGTTAACCA
LOC_Os09g34860
OsAffx.6480.1.S1_at--322--7871Chr09:20319216..20319240 (25 bp)
GGTTAACCAAGTTCCGAGCTACATG
LOC_Os09g34860
OsAffx.6480.1.S1_at--873--7631Chr09:20319406..20319430 (25 bp)
GGGACCAGGCTTAGTTCAGAGATAT
LOC_Os09g34860
OsAffx.6480.1.S1_at--412--6751Chr09:20319419..20319443 (25 bp)
GTTCAGAGATATACCAGTGCCAGAT
LOC_Os09g34860
OsAffx.6480.1.S1_at--1092--3431Chr09:20319439..20319463 (25 bp)
CAGATTTGGCTCACATTCAACAGGT
LOC_Os09g34860
OsAffx.6480.1.S1_at--846--2071Chr09:20319586..20319610 (25 bp)
ACATTTACCATACTTTGGCTGCCAA
LOC_Os09g34860
OsAffx.6480.1.S1_at--288--1511Chr09:20319721..20319745 (25 bp)
AGCACCCTGGTGATCTTGAGAGCAT
LOC_Os09g34860
OsAffx.6480.1.S1_at--319--4991Chr09:20320444..20320468 (25 bp)
GCATGCCGCAAGTTTCTATCTGGAG
LOC_Os09g34860
Target Sequence 
TATATTGCTCGGTCACTCTTTTGGAGGATATGTTGCGGCAAAGTACGCTTTACAGCATCCTGAGCACGTCCAACACTTGA
TCTTGGTCGGCCCTGCTGGCTTTTCATCAGAAACAGAGCATAGCTCTGAGTGGTTAACCAAGTTCCGAGCTACATGGAAA
GGCATGCTAGTGAATCATCTATGGGAGTCCAATTTTACTCCTCAAAGAATAGTGAGAGGATTGGGTCCTTGGGGACCAGG
CTTAGTTCAGAGATATACCAGTGCCAGATTTGGCTCACATTCAACAGGTGAATTACTAACAGAACAGGAATCCACATTAC
TGACAGATTACATTTACCATACTTTGGCTGCCAAAGCTAGTGGAGAGTTGTGCTTAAAACATATATTTTCCTTTGGGGCA
TTCGTGAGGAAACCTCTTCTGCAAAGGAGTTATGAGCACCCTGGTGATCTTGAGAGCATATGCACAATAGGAGGACATTT
TGTGTTCATAGATAATCCTTCGGGGTTCCACTCCGCGGTCTTCCACGCATGCCGCAAGTTTCTATCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis